Gene : AT4G35540 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11618//PTHR11618:SF23 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3642
Name:  ? AT4G35540 Secondary Identifier:  ? PAC:19645197
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G35540 0.5kb upstream 0.5kb upstream 2264 true Chr4: 16873335-16875598 Arabidopsis thaliana
AT4G35540 0.5kb upstream 0.5kb upstream 500 false Chr4: 16873335-16873834 Arabidopsis thaliana
AT4G35540 0.5kb downstream 0.5kb downstream 2264 true Chr4: 16873835-16876098 Arabidopsis thaliana
AT4G35540 0.5kb downstream 0.5kb downstream 500 false Chr4: 16875599-16876098 Arabidopsis thaliana
AT4G35540 1.0kb upstream 1.0kb upstream 2764 true Chr4: 16872835-16875598 Arabidopsis thaliana
AT4G35540 1.0kb upstream 1.0kb upstream 1000 false Chr4: 16872835-16873834 Arabidopsis thaliana
AT4G35540 1.0kb downstream 1.0kb downstream 2764 true Chr4: 16873835-16876598 Arabidopsis thaliana
AT4G35540 1.0kb downstream 1.0kb downstream 1000 false Chr4: 16875599-16876598 Arabidopsis thaliana
AT4G35540 2.0kb upstream 2.0kb upstream 3764 true Chr4: 16871835-16875598 Arabidopsis thaliana
AT4G35540 2.0kb upstream 2.0kb upstream 2000 false Chr4: 16871835-16873834 Arabidopsis thaliana
AT4G35540 2.0kb downstream 2.0kb downstream 3764 true Chr4: 16873835-16877598 Arabidopsis thaliana
AT4G35540 2.0kb downstream 2.0kb downstream 2000 false Chr4: 16875599-16877598 Arabidopsis thaliana
AT4G35540 5.0kb upstream 5.0kb upstream 6764 true Chr4: 16868835-16875598 Arabidopsis thaliana
AT4G35540 5.0kb upstream 5.0kb upstream 5000 false Chr4: 16868835-16873834 Arabidopsis thaliana
AT4G35540 5.0kb downstream 5.0kb downstream 6764 true Chr4: 16873835-16880598 Arabidopsis thaliana
AT4G35540 5.0kb downstream 5.0kb downstream 5000 false Chr4: 16875599-16880598 Arabidopsis thaliana
AT4G35540 10.0kb upstream 10.0kb upstream 11764 true Chr4: 16863835-16875598 Arabidopsis thaliana
AT4G35540 10.0kb upstream 10.0kb upstream 10000 false Chr4: 16863835-16873834 Arabidopsis thaliana
AT4G35540 10.0kb downstream 10.0kb downstream 11764 true Chr4: 16873835-16885598 Arabidopsis thaliana
AT4G35540 10.0kb downstream 10.0kb downstream 10000 false Chr4: 16875599-16885598 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375882 5261 Brassicaceae View MSA
123832926 5264 Brassicales-Malvales View MSA
124340116 5266 SBM View MSA
124240973 5268 Malvidae View MSA
124067498 5270 Rosid View MSA
123742191 5271 Pentapetalae View MSA
122787938 5272 Eudicot View MSA
122042980 5273 Angiosperm View MSA
121346449 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.486        
cufflinks 5.183        
cufflinks 3.352        
cufflinks 4.969        
cufflinks 3.097       Low
cufflinks 5.813       High

0 Strain