Gene : AT5G09880 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24012//PTHR24012:SF361 - FAMILY NOT NAMED // SPLICING FACTOR, CC1-LIKE Genomic Order:  904
Name:  ? AT5G09880 Secondary Identifier:  ? PAC:19673168
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09880 0.5kb upstream 0.5kb upstream 4323 true Chr5: 3081442-3085764 Arabidopsis thaliana
AT5G09880 0.5kb upstream 0.5kb upstream 500 false Chr5: 3085265-3085764 Arabidopsis thaliana
AT5G09880 0.5kb downstream 0.5kb downstream 4323 true Chr5: 3080942-3085264 Arabidopsis thaliana
AT5G09880 0.5kb downstream 0.5kb downstream 500 false Chr5: 3080942-3081441 Arabidopsis thaliana
AT5G09880 1.0kb upstream 1.0kb upstream 4823 true Chr5: 3081442-3086264 Arabidopsis thaliana
AT5G09880 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3085265-3086264 Arabidopsis thaliana
AT5G09880 1.0kb downstream 1.0kb downstream 4823 true Chr5: 3080442-3085264 Arabidopsis thaliana
AT5G09880 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3080442-3081441 Arabidopsis thaliana
AT5G09880 2.0kb upstream 2.0kb upstream 5823 true Chr5: 3081442-3087264 Arabidopsis thaliana
AT5G09880 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3085265-3087264 Arabidopsis thaliana
AT5G09880 2.0kb downstream 2.0kb downstream 5823 true Chr5: 3079442-3085264 Arabidopsis thaliana
AT5G09880 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3079442-3081441 Arabidopsis thaliana
AT5G09880 5.0kb upstream 5.0kb upstream 8823 true Chr5: 3081442-3090264 Arabidopsis thaliana
AT5G09880 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3085265-3090264 Arabidopsis thaliana
AT5G09880 5.0kb downstream 5.0kb downstream 8823 true Chr5: 3076442-3085264 Arabidopsis thaliana
AT5G09880 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3076442-3081441 Arabidopsis thaliana
AT5G09880 10.0kb upstream 10.0kb upstream 13823 true Chr5: 3081442-3095264 Arabidopsis thaliana
AT5G09880 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3085265-3095264 Arabidopsis thaliana
AT5G09880 10.0kb downstream 10.0kb downstream 13823 true Chr5: 3071442-3085264 Arabidopsis thaliana
AT5G09880 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3071442-3081441 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374613 5261 Brassicaceae View MSA
123832909 5264 Brassicales-Malvales View MSA
124351018 5266 SBM View MSA
124247466 5268 Malvidae View MSA
124068608 5270 Rosid View MSA
123744979 5271 Pentapetalae View MSA
122786536 5272 Eudicot View MSA
122047022 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121344314 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.597        
cufflinks 25.059       High
cufflinks 22.158        
cufflinks 25.828       High
cufflinks 21.764        
cufflinks 20.681        

0 Strain