Gene : AT5G09800 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  894
Name:  ? AT5G09800 Secondary Identifier:  ? PAC:19668937
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09800 0.5kb upstream 0.5kb upstream 1902 true Chr5: 3043012-3044913 Arabidopsis thaliana
AT5G09800 0.5kb upstream 0.5kb upstream 500 false Chr5: 3044414-3044913 Arabidopsis thaliana
AT5G09800 0.5kb downstream 0.5kb downstream 1902 true Chr5: 3042512-3044413 Arabidopsis thaliana
AT5G09800 0.5kb downstream 0.5kb downstream 500 false Chr5: 3042512-3043011 Arabidopsis thaliana
AT5G09800 1.0kb upstream 1.0kb upstream 2402 true Chr5: 3043012-3045413 Arabidopsis thaliana
AT5G09800 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3044414-3045413 Arabidopsis thaliana
AT5G09800 1.0kb downstream 1.0kb downstream 2402 true Chr5: 3042012-3044413 Arabidopsis thaliana
AT5G09800 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3042012-3043011 Arabidopsis thaliana
AT5G09800 2.0kb upstream 2.0kb upstream 3402 true Chr5: 3043012-3046413 Arabidopsis thaliana
AT5G09800 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3044414-3046413 Arabidopsis thaliana
AT5G09800 2.0kb downstream 2.0kb downstream 3402 true Chr5: 3041012-3044413 Arabidopsis thaliana
AT5G09800 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3041012-3043011 Arabidopsis thaliana
AT5G09800 5.0kb upstream 5.0kb upstream 6402 true Chr5: 3043012-3049413 Arabidopsis thaliana
AT5G09800 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3044414-3049413 Arabidopsis thaliana
AT5G09800 5.0kb downstream 5.0kb downstream 6402 true Chr5: 3038012-3044413 Arabidopsis thaliana
AT5G09800 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3038012-3043011 Arabidopsis thaliana
AT5G09800 10.0kb upstream 10.0kb upstream 11402 true Chr5: 3043012-3054413 Arabidopsis thaliana
AT5G09800 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3044414-3054413 Arabidopsis thaliana
AT5G09800 10.0kb downstream 10.0kb downstream 11402 true Chr5: 3033012-3044413 Arabidopsis thaliana
AT5G09800 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3033012-3043011 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381582 5261 Brassicaceae View MSA
123833487 5264 Brassicales-Malvales View MSA
124351138 5266 SBM View MSA
124239746 5268 Malvidae View MSA
124071729 5270 Rosid View MSA
123744205 5271 Pentapetalae View MSA
122785881 5272 Eudicot View MSA
122041845 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.387        
cufflinks 1.409        
cufflinks 0.708        
cufflinks 3.894       High
cufflinks 0.523       Low
cufflinks 2.186        

0 Strain