Gene : AT5G24740 A. thaliana TAIR10
Defline:  (1 of 1) PTHR16166//PTHR16166:SF100 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // SUBFAMILY NOT NAMED Genomic Order:  2362
Name:  ? AT5G24740 Secondary Identifier:  ? PAC:19669096
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G24740 0.5kb upstream 0.5kb upstream 20253 true Chr5: 8469951-8490203 Arabidopsis thaliana
AT5G24740 0.5kb upstream 0.5kb upstream 500 false Chr5: 8489704-8490203 Arabidopsis thaliana
AT5G24740 0.5kb downstream 0.5kb downstream 20253 true Chr5: 8469451-8489703 Arabidopsis thaliana
AT5G24740 0.5kb downstream 0.5kb downstream 500 false Chr5: 8469451-8469950 Arabidopsis thaliana
AT5G24740 1.0kb upstream 1.0kb upstream 20753 true Chr5: 8469951-8490703 Arabidopsis thaliana
AT5G24740 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8489704-8490703 Arabidopsis thaliana
AT5G24740 1.0kb downstream 1.0kb downstream 20753 true Chr5: 8468951-8489703 Arabidopsis thaliana
AT5G24740 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8468951-8469950 Arabidopsis thaliana
AT5G24740 2.0kb upstream 2.0kb upstream 21753 true Chr5: 8469951-8491703 Arabidopsis thaliana
AT5G24740 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8489704-8491703 Arabidopsis thaliana
AT5G24740 2.0kb downstream 2.0kb downstream 21753 true Chr5: 8467951-8489703 Arabidopsis thaliana
AT5G24740 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8467951-8469950 Arabidopsis thaliana
AT5G24740 5.0kb upstream 5.0kb upstream 24753 true Chr5: 8469951-8494703 Arabidopsis thaliana
AT5G24740 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8489704-8494703 Arabidopsis thaliana
AT5G24740 5.0kb downstream 5.0kb downstream 24753 true Chr5: 8464951-8489703 Arabidopsis thaliana
AT5G24740 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8464951-8469950 Arabidopsis thaliana
AT5G24740 10.0kb upstream 10.0kb upstream 29753 true Chr5: 8469951-8499703 Arabidopsis thaliana
AT5G24740 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8489704-8499703 Arabidopsis thaliana
AT5G24740 10.0kb downstream 10.0kb downstream 29753 true Chr5: 8459951-8489703 Arabidopsis thaliana
AT5G24740 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8459951-8469950 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360513 5261 Brassicaceae View MSA
123827993 5264 Brassicales-Malvales View MSA
124339674 5266 SBM View MSA
124239824 5268 Malvidae View MSA
124066672 5270 Rosid View MSA
123741349 5271 Pentapetalae View MSA
122793853 5272 Eudicot View MSA
122042276 5273 Angiosperm View MSA
121346115 5274 Embryophyte View MSA
123424266 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.291        
cufflinks 4.808       High
cufflinks 2.636       Low
cufflinks 4.728       High
cufflinks 2.756       Low
cufflinks 4.008        

0 Strain