Gene : AT5G40190 A. thaliana TAIR10
Defline:  (1 of 2) PTHR36039//PTHR36039:SF2 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15 Genomic Order:  3326
Name:  ? AT5G40190 Secondary Identifier:  ? PAC:19671008
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40190 0.5kb upstream 0.5kb upstream 1272 true Chr5: 16069177-16070448 Arabidopsis thaliana
AT5G40190 0.5kb upstream 0.5kb upstream 500 false Chr5: 16069949-16070448 Arabidopsis thaliana
AT5G40190 0.5kb downstream 0.5kb downstream 1272 true Chr5: 16068677-16069948 Arabidopsis thaliana
AT5G40190 0.5kb downstream 0.5kb downstream 500 false Chr5: 16068677-16069176 Arabidopsis thaliana
AT5G40190 1.0kb upstream 1.0kb upstream 1772 true Chr5: 16069177-16070948 Arabidopsis thaliana
AT5G40190 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16069949-16070948 Arabidopsis thaliana
AT5G40190 1.0kb downstream 1.0kb downstream 1772 true Chr5: 16068177-16069948 Arabidopsis thaliana
AT5G40190 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16068177-16069176 Arabidopsis thaliana
AT5G40190 2.0kb upstream 2.0kb upstream 2772 true Chr5: 16069177-16071948 Arabidopsis thaliana
AT5G40190 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16069949-16071948 Arabidopsis thaliana
AT5G40190 2.0kb downstream 2.0kb downstream 2772 true Chr5: 16067177-16069948 Arabidopsis thaliana
AT5G40190 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16067177-16069176 Arabidopsis thaliana
AT5G40190 5.0kb upstream 5.0kb upstream 5772 true Chr5: 16069177-16074948 Arabidopsis thaliana
AT5G40190 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16069949-16074948 Arabidopsis thaliana
AT5G40190 5.0kb downstream 5.0kb downstream 5772 true Chr5: 16064177-16069948 Arabidopsis thaliana
AT5G40190 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16064177-16069176 Arabidopsis thaliana
AT5G40190 10.0kb upstream 10.0kb upstream 10772 true Chr5: 16069177-16079948 Arabidopsis thaliana
AT5G40190 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16069949-16079948 Arabidopsis thaliana
AT5G40190 10.0kb downstream 10.0kb downstream 10772 true Chr5: 16059177-16069948 Arabidopsis thaliana
AT5G40190 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16059177-16069176 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378580 5261 Brassicaceae View MSA
123836516 5264 Brassicales-Malvales View MSA
124343954 5266 SBM View MSA
124252850 5268 Malvidae View MSA
124064557 5270 Rosid View MSA
123737242 5271 Pentapetalae View MSA
122793388 5272 Eudicot View MSA
122048746 5273 Angiosperm View MSA
121311093 5274 Embryophyte View MSA
123348440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.824        
cufflinks 25.946        
cufflinks 21.327        
cufflinks 26.753        
cufflinks 20.987       Low
cufflinks 28.346       High

0 Strain