Gene : XRN2 A. thaliana TAIR10
Primary Identifier:  ? AT5G42540 Defline:  (1 of 3) K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1)
Genomic Order:  3584 Name:  ? AT5G42540
Secondary Identifier:  ? PAC:19668357
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42540 0.5kb upstream 0.5kb upstream 7913 true Chr5: 17006889-17014801 Arabidopsis thaliana
AT5G42540 0.5kb upstream 0.5kb upstream 500 false Chr5: 17006889-17007388 Arabidopsis thaliana
AT5G42540 0.5kb downstream 0.5kb downstream 7913 true Chr5: 17007389-17015301 Arabidopsis thaliana
AT5G42540 0.5kb downstream 0.5kb downstream 500 false Chr5: 17014802-17015301 Arabidopsis thaliana
AT5G42540 1.0kb upstream 1.0kb upstream 8413 true Chr5: 17006389-17014801 Arabidopsis thaliana
AT5G42540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17006389-17007388 Arabidopsis thaliana
AT5G42540 1.0kb downstream 1.0kb downstream 8413 true Chr5: 17007389-17015801 Arabidopsis thaliana
AT5G42540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17014802-17015801 Arabidopsis thaliana
AT5G42540 2.0kb upstream 2.0kb upstream 9413 true Chr5: 17005389-17014801 Arabidopsis thaliana
AT5G42540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17005389-17007388 Arabidopsis thaliana
AT5G42540 2.0kb downstream 2.0kb downstream 9413 true Chr5: 17007389-17016801 Arabidopsis thaliana
AT5G42540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17014802-17016801 Arabidopsis thaliana
AT5G42540 5.0kb upstream 5.0kb upstream 12413 true Chr5: 17002389-17014801 Arabidopsis thaliana
AT5G42540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17002389-17007388 Arabidopsis thaliana
AT5G42540 5.0kb downstream 5.0kb downstream 12413 true Chr5: 17007389-17019801 Arabidopsis thaliana
AT5G42540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17014802-17019801 Arabidopsis thaliana
AT5G42540 10.0kb upstream 10.0kb upstream 17413 true Chr5: 16997389-17014801 Arabidopsis thaliana
AT5G42540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16997389-17007388 Arabidopsis thaliana
AT5G42540 10.0kb downstream 10.0kb downstream 17413 true Chr5: 17007389-17024801 Arabidopsis thaliana
AT5G42540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17014802-17024801 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026403 5273 Angiosperm View MSA
122363315 5261 Brassicaceae View MSA
123839945 5264 Brassicales-Malvales View MSA
124339631 5266 SBM View MSA
124247818 5268 Malvidae View MSA
124066178 5270 Rosid View MSA
123742031 5271 Pentapetalae View MSA
122789000 5272 Eudicot View MSA
123429022 5275 Viridiplantae View MSA
121350547 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.789        
cufflinks 6.594        
cufflinks 5.01       Low
cufflinks 7.415       High
cufflinks 5.398        
cufflinks 6.66        

0 Strain