Gene : RPA70C A. thaliana TAIR10
Primary Identifier:  ? AT5G45400 Defline:  (1 of 2) PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED
Genomic Order:  3913 Name:  ? AT5G45400
Secondary Identifier:  ? PAC:19672966
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45400 0.5kb upstream 0.5kb upstream 3155 true Chr5: 18398490-18401644 Arabidopsis thaliana
AT5G45400 0.5kb upstream 0.5kb upstream 500 false Chr5: 18398490-18398989 Arabidopsis thaliana
AT5G45400 0.5kb downstream 0.5kb downstream 3155 true Chr5: 18398990-18402144 Arabidopsis thaliana
AT5G45400 0.5kb downstream 0.5kb downstream 500 false Chr5: 18401645-18402144 Arabidopsis thaliana
AT5G45400 1.0kb upstream 1.0kb upstream 3655 true Chr5: 18397990-18401644 Arabidopsis thaliana
AT5G45400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18397990-18398989 Arabidopsis thaliana
AT5G45400 1.0kb downstream 1.0kb downstream 3655 true Chr5: 18398990-18402644 Arabidopsis thaliana
AT5G45400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18401645-18402644 Arabidopsis thaliana
AT5G45400 2.0kb upstream 2.0kb upstream 4655 true Chr5: 18396990-18401644 Arabidopsis thaliana
AT5G45400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18396990-18398989 Arabidopsis thaliana
AT5G45400 2.0kb downstream 2.0kb downstream 4655 true Chr5: 18398990-18403644 Arabidopsis thaliana
AT5G45400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18401645-18403644 Arabidopsis thaliana
AT5G45400 5.0kb upstream 5.0kb upstream 7655 true Chr5: 18393990-18401644 Arabidopsis thaliana
AT5G45400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18393990-18398989 Arabidopsis thaliana
AT5G45400 5.0kb downstream 5.0kb downstream 7655 true Chr5: 18398990-18406644 Arabidopsis thaliana
AT5G45400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18401645-18406644 Arabidopsis thaliana
AT5G45400 10.0kb upstream 10.0kb upstream 12655 true Chr5: 18388990-18401644 Arabidopsis thaliana
AT5G45400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18388990-18398989 Arabidopsis thaliana
AT5G45400 10.0kb downstream 10.0kb downstream 12655 true Chr5: 18398990-18411644 Arabidopsis thaliana
AT5G45400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18401645-18411644 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379708 5261 Brassicaceae View MSA
123836106 5264 Brassicales-Malvales View MSA
124341565 5266 SBM View MSA
124242896 5268 Malvidae View MSA
124068074 5270 Rosid View MSA
123745243 5271 Pentapetalae View MSA
122789986 5272 Eudicot View MSA
122046112 5273 Angiosperm View MSA
121350222 5274 Embryophyte View MSA
123423860 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.503        
cufflinks 4.255        
cufflinks 1.87        
cufflinks 4.53        
cufflinks 1.41       Low
cufflinks 4.878        

0 Strain