Gene : AGL42 A. thaliana TAIR10
Primary Identifier:  ? AT5G62165 Defline:  (1 of 3) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1
Genomic Order:  5723 Name:  ? AT5G62165
Secondary Identifier:  ? PAC:19672595
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62165 0.5kb upstream 0.5kb upstream 4321 true Chr5: 24964200-24968520 Arabidopsis thaliana
AT5G62165 0.5kb upstream 0.5kb upstream 500 false Chr5: 24964200-24964699 Arabidopsis thaliana
AT5G62165 0.5kb downstream 0.5kb downstream 4321 true Chr5: 24964700-24969020 Arabidopsis thaliana
AT5G62165 0.5kb downstream 0.5kb downstream 500 false Chr5: 24968521-24969020 Arabidopsis thaliana
AT5G62165 1.0kb upstream 1.0kb upstream 4821 true Chr5: 24963700-24968520 Arabidopsis thaliana
AT5G62165 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24963700-24964699 Arabidopsis thaliana
AT5G62165 1.0kb downstream 1.0kb downstream 4821 true Chr5: 24964700-24969520 Arabidopsis thaliana
AT5G62165 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24968521-24969520 Arabidopsis thaliana
AT5G62165 2.0kb upstream 2.0kb upstream 5821 true Chr5: 24962700-24968520 Arabidopsis thaliana
AT5G62165 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24962700-24964699 Arabidopsis thaliana
AT5G62165 2.0kb downstream 2.0kb downstream 5821 true Chr5: 24964700-24970520 Arabidopsis thaliana
AT5G62165 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24968521-24970520 Arabidopsis thaliana
AT5G62165 5.0kb upstream 5.0kb upstream 8821 true Chr5: 24959700-24968520 Arabidopsis thaliana
AT5G62165 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24959700-24964699 Arabidopsis thaliana
AT5G62165 5.0kb downstream 5.0kb downstream 8821 true Chr5: 24964700-24973520 Arabidopsis thaliana
AT5G62165 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24968521-24973520 Arabidopsis thaliana
AT5G62165 10.0kb upstream 10.0kb upstream 13821 true Chr5: 24954700-24968520 Arabidopsis thaliana
AT5G62165 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24954700-24964699 Arabidopsis thaliana
AT5G62165 10.0kb downstream 10.0kb downstream 13821 true Chr5: 24964700-24978520 Arabidopsis thaliana
AT5G62165 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24968521-24978520 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365085 5261 Brassicaceae View MSA
123837457 5264 Brassicales-Malvales View MSA
124347813 5266 SBM View MSA
124252932 5268 Malvidae View MSA
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.337        
cufflinks 2.07        
cufflinks 0.172     Low Low
cufflinks 1.875        
cufflinks 0.159     Low Low
cufflinks 1.995        

0 Strain