Gene : IBM1 A. thaliana TAIR10
Primary Identifier:  ? AT3G07610 Defline:  (1 of 6) K15601 - lysine-specific demethylase 3 [EC:1.14.11.-] (KDM3)
Genomic Order:  753 Name:  ? AT3G07610
Secondary Identifier:  ? PAC:19661569
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07610 0.5kb upstream 0.5kb upstream 7345 true Chr3: 2425569-2432913 Arabidopsis thaliana
AT3G07610 0.5kb upstream 0.5kb upstream 500 false Chr3: 2425569-2426068 Arabidopsis thaliana
AT3G07610 0.5kb downstream 0.5kb downstream 7345 true Chr3: 2426069-2433413 Arabidopsis thaliana
AT3G07610 0.5kb downstream 0.5kb downstream 500 false Chr3: 2432914-2433413 Arabidopsis thaliana
AT3G07610 1.0kb upstream 1.0kb upstream 7845 true Chr3: 2425069-2432913 Arabidopsis thaliana
AT3G07610 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2425069-2426068 Arabidopsis thaliana
AT3G07610 1.0kb downstream 1.0kb downstream 7845 true Chr3: 2426069-2433913 Arabidopsis thaliana
AT3G07610 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2432914-2433913 Arabidopsis thaliana
AT3G07610 2.0kb upstream 2.0kb upstream 8845 true Chr3: 2424069-2432913 Arabidopsis thaliana
AT3G07610 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2424069-2426068 Arabidopsis thaliana
AT3G07610 2.0kb downstream 2.0kb downstream 8845 true Chr3: 2426069-2434913 Arabidopsis thaliana
AT3G07610 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2432914-2434913 Arabidopsis thaliana
AT3G07610 5.0kb upstream 5.0kb upstream 11845 true Chr3: 2421069-2432913 Arabidopsis thaliana
AT3G07610 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2421069-2426068 Arabidopsis thaliana
AT3G07610 5.0kb downstream 5.0kb downstream 11845 true Chr3: 2426069-2437913 Arabidopsis thaliana
AT3G07610 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2432914-2437913 Arabidopsis thaliana
AT3G07610 10.0kb upstream 10.0kb upstream 16845 true Chr3: 2416069-2432913 Arabidopsis thaliana
AT3G07610 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2416069-2426068 Arabidopsis thaliana
AT3G07610 10.0kb downstream 10.0kb downstream 16845 true Chr3: 2426069-2442913 Arabidopsis thaliana
AT3G07610 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2432914-2442913 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379744 5261 Brassicaceae View MSA
123837186 5264 Brassicales-Malvales View MSA
124350617 5266 SBM View MSA
124252655 5268 Malvidae View MSA
124073545 5270 Rosid View MSA
123747808 5271 Pentapetalae View MSA
122796242 5272 Eudicot View MSA
122050393 5273 Angiosperm View MSA
121349542 5274 Embryophyte View MSA
123425923 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.429        
cufflinks 1.938       Low
cufflinks 2.062        
cufflinks 2.465       High
cufflinks 2.173        
cufflinks 2.284        

0 Strain