Gene : AT3G06770 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  662
Name:  ? AT3G06770 Secondary Identifier:  ? PAC:19658670
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G06770 0.5kb upstream 0.5kb upstream 2929 true Chr3: 2134800-2137728 Arabidopsis thaliana
AT3G06770 0.5kb upstream 0.5kb upstream 500 false Chr3: 2137229-2137728 Arabidopsis thaliana
AT3G06770 0.5kb downstream 0.5kb downstream 2929 true Chr3: 2134300-2137228 Arabidopsis thaliana
AT3G06770 0.5kb downstream 0.5kb downstream 500 false Chr3: 2134300-2134799 Arabidopsis thaliana
AT3G06770 1.0kb upstream 1.0kb upstream 3429 true Chr3: 2134800-2138228 Arabidopsis thaliana
AT3G06770 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2137229-2138228 Arabidopsis thaliana
AT3G06770 1.0kb downstream 1.0kb downstream 3429 true Chr3: 2133800-2137228 Arabidopsis thaliana
AT3G06770 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2133800-2134799 Arabidopsis thaliana
AT3G06770 2.0kb upstream 2.0kb upstream 4429 true Chr3: 2134800-2139228 Arabidopsis thaliana
AT3G06770 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2137229-2139228 Arabidopsis thaliana
AT3G06770 2.0kb downstream 2.0kb downstream 4429 true Chr3: 2132800-2137228 Arabidopsis thaliana
AT3G06770 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2132800-2134799 Arabidopsis thaliana
AT3G06770 5.0kb upstream 5.0kb upstream 7429 true Chr3: 2134800-2142228 Arabidopsis thaliana
AT3G06770 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2137229-2142228 Arabidopsis thaliana
AT3G06770 5.0kb downstream 5.0kb downstream 7429 true Chr3: 2129800-2137228 Arabidopsis thaliana
AT3G06770 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2129800-2134799 Arabidopsis thaliana
AT3G06770 10.0kb upstream 10.0kb upstream 12429 true Chr3: 2134800-2147228 Arabidopsis thaliana
AT3G06770 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2137229-2147228 Arabidopsis thaliana
AT3G06770 10.0kb downstream 10.0kb downstream 12429 true Chr3: 2124800-2137228 Arabidopsis thaliana
AT3G06770 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2124800-2134799 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041297 5273 Angiosperm View MSA
122367347 5261 Brassicaceae View MSA
123799336 5264 Brassicales-Malvales View MSA
124296867 5266 SBM View MSA
124148903 5268 Malvidae View MSA
124067442 5270 Rosid View MSA
123742680 5271 Pentapetalae View MSA
122790436 5272 Eudicot View MSA
121348435 5274 Embryophyte View MSA
123380865 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.946       High
cufflinks 4.625        
cufflinks 3.933        
cufflinks 3.133        
cufflinks 2.864       Low
cufflinks 5.597        

0 Strain