Gene : PHYA A. thaliana TAIR10
Primary Identifier:  ? AT1G09570 Defline:  (1 of 1) K12120 - phytochrome A (PHYA)
Genomic Order:  911 Name:  ? AT1G09570
Secondary Identifier:  ? PAC:19658068
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09570 0.5kb upstream 0.5kb upstream 5602 true Chr1: 3095256-3100857 Arabidopsis thaliana
AT1G09570 0.5kb upstream 0.5kb upstream 500 false Chr1: 3100358-3100857 Arabidopsis thaliana
AT1G09570 0.5kb downstream 0.5kb downstream 5602 true Chr1: 3094756-3100357 Arabidopsis thaliana
AT1G09570 0.5kb downstream 0.5kb downstream 500 false Chr1: 3094756-3095255 Arabidopsis thaliana
AT1G09570 1.0kb upstream 1.0kb upstream 6102 true Chr1: 3095256-3101357 Arabidopsis thaliana
AT1G09570 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3100358-3101357 Arabidopsis thaliana
AT1G09570 1.0kb downstream 1.0kb downstream 6102 true Chr1: 3094256-3100357 Arabidopsis thaliana
AT1G09570 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3094256-3095255 Arabidopsis thaliana
AT1G09570 2.0kb upstream 2.0kb upstream 7102 true Chr1: 3095256-3102357 Arabidopsis thaliana
AT1G09570 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3100358-3102357 Arabidopsis thaliana
AT1G09570 2.0kb downstream 2.0kb downstream 7102 true Chr1: 3093256-3100357 Arabidopsis thaliana
AT1G09570 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3093256-3095255 Arabidopsis thaliana
AT1G09570 5.0kb upstream 5.0kb upstream 10102 true Chr1: 3095256-3105357 Arabidopsis thaliana
AT1G09570 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3100358-3105357 Arabidopsis thaliana
AT1G09570 5.0kb downstream 5.0kb downstream 10102 true Chr1: 3090256-3100357 Arabidopsis thaliana
AT1G09570 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3090256-3095255 Arabidopsis thaliana
AT1G09570 10.0kb upstream 10.0kb upstream 15102 true Chr1: 3095256-3110357 Arabidopsis thaliana
AT1G09570 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3100358-3110357 Arabidopsis thaliana
AT1G09570 10.0kb downstream 10.0kb downstream 15102 true Chr1: 3085256-3100357 Arabidopsis thaliana
AT1G09570 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3085256-3095255 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373936 5261 Brassicaceae View MSA
123829653 5264 Brassicales-Malvales View MSA
124339905 5266 SBM View MSA
124253959 5268 Malvidae View MSA
124063137 5270 Rosid View MSA
123743412 5271 Pentapetalae View MSA
122786313 5272 Eudicot View MSA
122046553 5273 Angiosperm View MSA
121310619 5274 Embryophyte View MSA
123348057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.248       Low
cufflinks 16.219        
cufflinks 18.776        
cufflinks 16.312        
cufflinks 21.95       High
cufflinks 15.281        

0 Strain