Gene : AT1G42470 A. thaliana TAIR10
Defline:  (1 of 2) K12385 - Niemann-Pick C1 protein (NPC1) Genomic Order:  3578
Name:  ? AT1G42470 Secondary Identifier:  ? PAC:19650222
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G42470 0.5kb upstream 0.5kb upstream 8722 true Chr1: 15926487-15935208 Arabidopsis thaliana
AT1G42470 0.5kb upstream 0.5kb upstream 500 false Chr1: 15926487-15926986 Arabidopsis thaliana
AT1G42470 0.5kb downstream 0.5kb downstream 8722 true Chr1: 15926987-15935708 Arabidopsis thaliana
AT1G42470 0.5kb downstream 0.5kb downstream 500 false Chr1: 15935209-15935708 Arabidopsis thaliana
AT1G42470 1.0kb upstream 1.0kb upstream 9222 true Chr1: 15925987-15935208 Arabidopsis thaliana
AT1G42470 1.0kb upstream 1.0kb upstream 1000 false Chr1: 15925987-15926986 Arabidopsis thaliana
AT1G42470 1.0kb downstream 1.0kb downstream 9222 true Chr1: 15926987-15936208 Arabidopsis thaliana
AT1G42470 1.0kb downstream 1.0kb downstream 1000 false Chr1: 15935209-15936208 Arabidopsis thaliana
AT1G42470 2.0kb upstream 2.0kb upstream 10222 true Chr1: 15924987-15935208 Arabidopsis thaliana
AT1G42470 2.0kb upstream 2.0kb upstream 2000 false Chr1: 15924987-15926986 Arabidopsis thaliana
AT1G42470 2.0kb downstream 2.0kb downstream 10222 true Chr1: 15926987-15937208 Arabidopsis thaliana
AT1G42470 2.0kb downstream 2.0kb downstream 2000 false Chr1: 15935209-15937208 Arabidopsis thaliana
AT1G42470 5.0kb upstream 5.0kb upstream 13222 true Chr1: 15921987-15935208 Arabidopsis thaliana
AT1G42470 5.0kb upstream 5.0kb upstream 5000 false Chr1: 15921987-15926986 Arabidopsis thaliana
AT1G42470 5.0kb downstream 5.0kb downstream 13222 true Chr1: 15926987-15940208 Arabidopsis thaliana
AT1G42470 5.0kb downstream 5.0kb downstream 5000 false Chr1: 15935209-15940208 Arabidopsis thaliana
AT1G42470 10.0kb upstream 10.0kb upstream 18222 true Chr1: 15916987-15935208 Arabidopsis thaliana
AT1G42470 10.0kb upstream 10.0kb upstream 10000 false Chr1: 15916987-15926986 Arabidopsis thaliana
AT1G42470 10.0kb downstream 10.0kb downstream 18222 true Chr1: 15926987-15945208 Arabidopsis thaliana
AT1G42470 10.0kb downstream 10.0kb downstream 10000 false Chr1: 15935209-15945208 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367660 5261 Brassicaceae View MSA
123827805 5264 Brassicales-Malvales View MSA
124346774 5266 SBM View MSA
124251658 5268 Malvidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.17       Low
cufflinks 12.59        
cufflinks 5.978        
cufflinks 14.443       High
cufflinks 6.216        
cufflinks 12.881        

0 Strain