Gene : NRPD1A A. thaliana TAIR10
Primary Identifier:  ? AT1G63020 Defline:  (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1)
Genomic Order:  5214 Name:  ? AT1G63020
Secondary Identifier:  ? PAC:19658278
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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G63020 0.5kb upstream 0.5kb upstream 8380 true Chr1: 23354685-23363064 Arabidopsis thaliana
AT1G63020 0.5kb upstream 0.5kb upstream 500 false Chr1: 23362565-23363064 Arabidopsis thaliana
AT1G63020 0.5kb downstream 0.5kb downstream 8380 true Chr1: 23354185-23362564 Arabidopsis thaliana
AT1G63020 0.5kb downstream 0.5kb downstream 500 false Chr1: 23354185-23354684 Arabidopsis thaliana
AT1G63020 1.0kb upstream 1.0kb upstream 8880 true Chr1: 23354685-23363564 Arabidopsis thaliana
AT1G63020 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23362565-23363564 Arabidopsis thaliana
AT1G63020 1.0kb downstream 1.0kb downstream 8880 true Chr1: 23353685-23362564 Arabidopsis thaliana
AT1G63020 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23353685-23354684 Arabidopsis thaliana
AT1G63020 2.0kb upstream 2.0kb upstream 9880 true Chr1: 23354685-23364564 Arabidopsis thaliana
AT1G63020 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23362565-23364564 Arabidopsis thaliana
AT1G63020 2.0kb downstream 2.0kb downstream 9880 true Chr1: 23352685-23362564 Arabidopsis thaliana
AT1G63020 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23352685-23354684 Arabidopsis thaliana
AT1G63020 5.0kb upstream 5.0kb upstream 12880 true Chr1: 23354685-23367564 Arabidopsis thaliana
AT1G63020 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23362565-23367564 Arabidopsis thaliana
AT1G63020 5.0kb downstream 5.0kb downstream 12880 true Chr1: 23349685-23362564 Arabidopsis thaliana
AT1G63020 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23349685-23354684 Arabidopsis thaliana
AT1G63020 10.0kb upstream 10.0kb upstream 17880 true Chr1: 23354685-23372564 Arabidopsis thaliana
AT1G63020 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23362565-23372564 Arabidopsis thaliana
AT1G63020 10.0kb downstream 10.0kb downstream 17880 true Chr1: 23344685-23362564 Arabidopsis thaliana
AT1G63020 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23344685-23354684 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372243 5261 Brassicaceae View MSA
123828844 5264 Brassicales-Malvales View MSA
124337732 5266 SBM View MSA
124238381 5268 Malvidae View MSA
124061833 5270 Rosid View MSA
123751056 5271 Pentapetalae View MSA
122788895 5272 Eudicot View MSA
122051647 5273 Angiosperm View MSA
121348824 5274 Embryophyte View MSA
123381031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.513        
cufflinks 1.48       High
cufflinks 0.484        
cufflinks 1.067        
cufflinks 0.435       Low
cufflinks 0.82        

0 Strain