Protein Family : nuclear RNA polymerase D1A 123751056

Method ID:  5271 Method Name:  Pentapetalae
Sequence Alignment:  View MSA Member Count:  45

45 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
30190.t000349 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) R. communis v0.1 13622   30190: 1916062-1929683
Cucsa.041530 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. sativus v1.0 13005   scaffold00540: 71891-84895
orange1.1g000525m.g (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. sinensis v1.1 14431   scaffold00040: 317155-331585
AT1G63020 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) A. thaliana TAIR10 NRPD1A 7880   Chr1: 23354685-23362564
Thhalv10023214m.g (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 E. salsugineum v1.0 5954   scaffold_8: 1266290-1272243
Ciclev10018489m.g (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. clementina v1.0 13662   scaffold_3: 6765569-6779230
Lus10006339.g (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 L. usitatissimum v1.0 6324   scaffold1072: 190246-196569
Lus10002955.g (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 L. usitatissimum v1.0 6286   scaffold2416: 4372-10657
Gorai.004G207300 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. raimondii v2.1 11905   Chr04: 53813408-53825312
Gorai.007G022200 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. raimondii v2.1 7465   Chr07: 1605147-1612611
Thecc1EG016168 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) T. cacao v1.1 15714   scaffold_3: 31623992-31639705
Migut.A00916 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 M. guttatus v2.0 8761   scaffold_1: 5633177-5641937
Araha.27262s0001 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 A. halleri v1.1 7614   Scaffold27262: 1348-8961
Cagra.6357s0008 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. grandiflora v1.1 7289   Scaffold6357: 35116-42404
Glyma.11G026700 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. max Wm82.a2.v1 14510   Chr11: 1908384-1922893
Glyma.01G215700 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. max Wm82.a2.v1 14076   Chr01: 54624114-54638189
Brara.I01205 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 B. rapa FPsc v1.3 7405   A09: 7174062-7181466
Bostr.22157s0020 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 B. stricta v1.2 7059   Scaffold22157: 114836-121894
Medtr5g011000 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 M. truncatula Mt4.0v1 14620   chr5: 3060764-3075383
SapurV1A.0282s0120 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) S. purpurea v1.0 14354   chr01: 7546587-7560940
Eucgr.D01929 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 E. grandis v2.0 17824   Chr04: 32769046-32786869
Prupe.5G089300 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 P. persica v2.1 11194   Pp05: 10003602-10014795
Manes.02G028200 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 M. esculenta v6.1 15343   Chromosome02: 2156553-2171895
Kalax.0113s0008 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 K. laxiflora v1.1 8937   scaffold_113: 69649-78585
Kalax.0073s0075 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 K. laxiflora v1.1 8918   scaffold_73: 685586-694503
Kaladp0046s0330 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) K. fedtschenkoi v1.1 8934   Scaffold_46: 3387887-3396820
AL2G12580 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) A. lyrata v2.1 7675   scaffold_2: 1274008-1281682
Tp57577_TGAC_v2_gene33163 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) T. pratense v2 9389   Tp57577_TGAC_v2_LG6: 6540666-6550054
Tp57577_TGAC_v2_gene6660 (1 of 1) PF04983//PF04997//PF05000//PF11523 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) // Protein of unknown function (DUF3223) (DUF3223) T. pratense v2 14294   Tp57577_TGAC_v2_LG2: 30513184-30527477
DCAR_006765 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) D. carota v2.0 13142   DCARv2_Chr2: 28463529-28476670

45 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30190.m011113 R. communis v0.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
orange1.1g000525m C. sinensis v1.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
AT1G63020.1 A. thaliana TAIR10 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Ciclev10018489m C. clementina v1.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Lus10006339 L. usitatissimum v1.0 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Glyma.11G026700.1.p G. max Wm82.a2.v1 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Glyma.01G215700.1.p G. max Wm82.a2.v1 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Medtr5g011000.1 M. truncatula Mt4.0v1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
SapurV1A.0282s0120.1.p S. purpurea v1.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Eucgr.D01929.1.p E. grandis v2.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Prupe.5G089300.1.p P. persica v2.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Kalax.0073s0075.1.p K. laxiflora v1.1 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Kaladp0046s0330.1.p K. fedtschenkoi v1.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Tp57577_TGAC_v2_mRNA34280 T. pratense v2 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
DCAR_006765 D. carota v2.0 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
DCAR_008426 D. carota v2.0 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Solyc08g080210.2.1 S. lycopersicum ITAG2.4 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
AUR62010662-RA C. quinoa v1.0 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
AUR62017301-RA C. quinoa v1.0 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Phvul.002G153700.3.p P. vulgaris v2.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Potri.001G111300.1.p P. trichocarpa v3.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Oeu062351.1 O. europaea v1.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Lsat_1_v5_gn_3_5900.1 L. sativa V8 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Carub.0002s0198.1.p C. rubella v1.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
MD04G1068800 M. domestica v1.1 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Ca_02404 C. arietinum v1.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Cucsa.041530.1 C. sativus v1.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Thhalv10023214m E. salsugineum v1.0 123751056 nuclear RNA polymerase D1A 1 5271 Pentapetalae
Lus10002955 L. usitatissimum v1.0 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae
Gorai.004G207300.1 G. raimondii v2.1 123751056 nuclear RNA polymerase D1A 2 5271 Pentapetalae