Gene : CMPG1 A. thaliana TAIR10
Primary Identifier:  ? AT1G66160 Defline:  (1 of 7) PTHR22849//PTHR22849:SF52 - WDSAM1 PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED
Genomic Order:  5548 Name:  ? AT1G66160
Secondary Identifier:  ? PAC:19653413
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G66160 0.5kb upstream 0.5kb upstream 1913 true Chr1: 24636696-24638608 Arabidopsis thaliana
AT1G66160 0.5kb upstream 0.5kb upstream 500 false Chr1: 24636696-24637195 Arabidopsis thaliana
AT1G66160 0.5kb downstream 0.5kb downstream 1913 true Chr1: 24637196-24639108 Arabidopsis thaliana
AT1G66160 0.5kb downstream 0.5kb downstream 500 false Chr1: 24638609-24639108 Arabidopsis thaliana
AT1G66160 1.0kb upstream 1.0kb upstream 2413 true Chr1: 24636196-24638608 Arabidopsis thaliana
AT1G66160 1.0kb upstream 1.0kb upstream 1000 false Chr1: 24636196-24637195 Arabidopsis thaliana
AT1G66160 1.0kb downstream 1.0kb downstream 2413 true Chr1: 24637196-24639608 Arabidopsis thaliana
AT1G66160 1.0kb downstream 1.0kb downstream 1000 false Chr1: 24638609-24639608 Arabidopsis thaliana
AT1G66160 2.0kb upstream 2.0kb upstream 3413 true Chr1: 24635196-24638608 Arabidopsis thaliana
AT1G66160 2.0kb upstream 2.0kb upstream 2000 false Chr1: 24635196-24637195 Arabidopsis thaliana
AT1G66160 2.0kb downstream 2.0kb downstream 3413 true Chr1: 24637196-24640608 Arabidopsis thaliana
AT1G66160 2.0kb downstream 2.0kb downstream 2000 false Chr1: 24638609-24640608 Arabidopsis thaliana
AT1G66160 5.0kb upstream 5.0kb upstream 6413 true Chr1: 24632196-24638608 Arabidopsis thaliana
AT1G66160 5.0kb upstream 5.0kb upstream 5000 false Chr1: 24632196-24637195 Arabidopsis thaliana
AT1G66160 5.0kb downstream 5.0kb downstream 6413 true Chr1: 24637196-24643608 Arabidopsis thaliana
AT1G66160 5.0kb downstream 5.0kb downstream 5000 false Chr1: 24638609-24643608 Arabidopsis thaliana
AT1G66160 10.0kb upstream 10.0kb upstream 11413 true Chr1: 24627196-24638608 Arabidopsis thaliana
AT1G66160 10.0kb upstream 10.0kb upstream 10000 false Chr1: 24627196-24637195 Arabidopsis thaliana
AT1G66160 10.0kb downstream 10.0kb downstream 11413 true Chr1: 24637196-24648608 Arabidopsis thaliana
AT1G66160 10.0kb downstream 10.0kb downstream 10000 false Chr1: 24638609-24648608 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367409 5261 Brassicaceae View MSA
123838287 5264 Brassicales-Malvales View MSA
124342273 5266 SBM View MSA
124246000 5268 Malvidae View MSA
124062447 5270 Rosid View MSA
123744256 5271 Pentapetalae View MSA
122789600 5272 Eudicot View MSA
122042359 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.317        
cufflinks 13.057       High
cufflinks 7.096        
cufflinks 8.688        
cufflinks 2.498       Low
cufflinks 8.993        

0 Strain