Gene : AT1G43860 A. thaliana TAIR10
Defline:  (1 of 1) K14574 - ribosome maturation protein SDO1 (SDO1, SBDS) Genomic Order:  3640
Name:  ? AT1G43860 Secondary Identifier:  ? PAC:19654654
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G43860 0.5kb upstream 0.5kb upstream 2902 true Chr1: 16622068-16624969 Arabidopsis thaliana
AT1G43860 0.5kb upstream 0.5kb upstream 500 false Chr1: 16624470-16624969 Arabidopsis thaliana
AT1G43860 0.5kb downstream 0.5kb downstream 2902 true Chr1: 16621568-16624469 Arabidopsis thaliana
AT1G43860 0.5kb downstream 0.5kb downstream 500 false Chr1: 16621568-16622067 Arabidopsis thaliana
AT1G43860 1.0kb upstream 1.0kb upstream 3402 true Chr1: 16622068-16625469 Arabidopsis thaliana
AT1G43860 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16624470-16625469 Arabidopsis thaliana
AT1G43860 1.0kb downstream 1.0kb downstream 3402 true Chr1: 16621068-16624469 Arabidopsis thaliana
AT1G43860 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16621068-16622067 Arabidopsis thaliana
AT1G43860 2.0kb upstream 2.0kb upstream 4402 true Chr1: 16622068-16626469 Arabidopsis thaliana
AT1G43860 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16624470-16626469 Arabidopsis thaliana
AT1G43860 2.0kb downstream 2.0kb downstream 4402 true Chr1: 16620068-16624469 Arabidopsis thaliana
AT1G43860 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16620068-16622067 Arabidopsis thaliana
AT1G43860 5.0kb upstream 5.0kb upstream 7402 true Chr1: 16622068-16629469 Arabidopsis thaliana
AT1G43860 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16624470-16629469 Arabidopsis thaliana
AT1G43860 5.0kb downstream 5.0kb downstream 7402 true Chr1: 16617068-16624469 Arabidopsis thaliana
AT1G43860 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16617068-16622067 Arabidopsis thaliana
AT1G43860 10.0kb upstream 10.0kb upstream 12402 true Chr1: 16622068-16634469 Arabidopsis thaliana
AT1G43860 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16624470-16634469 Arabidopsis thaliana
AT1G43860 10.0kb downstream 10.0kb downstream 12402 true Chr1: 16612068-16624469 Arabidopsis thaliana
AT1G43860 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16612068-16622067 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367058 5261 Brassicaceae View MSA
123831618 5264 Brassicales-Malvales View MSA
124341908 5266 SBM View MSA
124238928 5268 Malvidae View MSA
124061735 5270 Rosid View MSA
123739408 5271 Pentapetalae View MSA
122786845 5272 Eudicot View MSA
122043852 5273 Angiosperm View MSA
121346736 5274 Embryophyte View MSA
123428704 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.638        
cufflinks 8.105        
cufflinks 6.011       Low
cufflinks 8.843        
cufflinks 6.622        
cufflinks 9.599       High

0 Strain