Gene : AT2G27330 A. thaliana TAIR10
Defline:  (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  2019
Name:  ? AT2G27330 Secondary Identifier:  ? PAC:19638198
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27330 0.5kb upstream 0.5kb upstream 2099 true Chr2: 11695032-11697130 Arabidopsis thaliana
AT2G27330 0.5kb upstream 0.5kb upstream 500 false Chr2: 11696631-11697130 Arabidopsis thaliana
AT2G27330 0.5kb downstream 0.5kb downstream 2099 true Chr2: 11694532-11696630 Arabidopsis thaliana
AT2G27330 0.5kb downstream 0.5kb downstream 500 false Chr2: 11694532-11695031 Arabidopsis thaliana
AT2G27330 1.0kb upstream 1.0kb upstream 2599 true Chr2: 11695032-11697630 Arabidopsis thaliana
AT2G27330 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11696631-11697630 Arabidopsis thaliana
AT2G27330 1.0kb downstream 1.0kb downstream 2599 true Chr2: 11694032-11696630 Arabidopsis thaliana
AT2G27330 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11694032-11695031 Arabidopsis thaliana
AT2G27330 2.0kb upstream 2.0kb upstream 3599 true Chr2: 11695032-11698630 Arabidopsis thaliana
AT2G27330 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11696631-11698630 Arabidopsis thaliana
AT2G27330 2.0kb downstream 2.0kb downstream 3599 true Chr2: 11693032-11696630 Arabidopsis thaliana
AT2G27330 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11693032-11695031 Arabidopsis thaliana
AT2G27330 5.0kb upstream 5.0kb upstream 6599 true Chr2: 11695032-11701630 Arabidopsis thaliana
AT2G27330 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11696631-11701630 Arabidopsis thaliana
AT2G27330 5.0kb downstream 5.0kb downstream 6599 true Chr2: 11690032-11696630 Arabidopsis thaliana
AT2G27330 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11690032-11695031 Arabidopsis thaliana
AT2G27330 10.0kb upstream 10.0kb upstream 11599 true Chr2: 11695032-11706630 Arabidopsis thaliana
AT2G27330 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11696631-11706630 Arabidopsis thaliana
AT2G27330 10.0kb downstream 10.0kb downstream 11599 true Chr2: 11685032-11696630 Arabidopsis thaliana
AT2G27330 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11685032-11695031 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379985 5261 Brassicaceae View MSA
123841092 5264 Brassicales-Malvales View MSA
124347159 5266 SBM View MSA
124246707 5268 Malvidae View MSA
124069312 5270 Rosid View MSA
123753292 5271 Pentapetalae View MSA
122796166 5272 Eudicot View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.468        
cufflinks 8.05       High
cufflinks 5.316        
cufflinks 7.438        
cufflinks 4.946       Low
cufflinks 7.428        

0 Strain