Gene : AT2G19920 A. thaliana TAIR10
Defline:  (1 of 3) PTHR23079:SF13 - RNA-DEPENDENT RNA POLYMERASE 3-RELATED Genomic Order:  1231
Name:  ? AT2G19920 Secondary Identifier:  ? PAC:19642099
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G19920 0.5kb upstream 0.5kb upstream 5166 true Chr2: 8602222-8607387 Arabidopsis thaliana
AT2G19920 0.5kb upstream 0.5kb upstream 500 false Chr2: 8606888-8607387 Arabidopsis thaliana
AT2G19920 0.5kb downstream 0.5kb downstream 5166 true Chr2: 8601722-8606887 Arabidopsis thaliana
AT2G19920 0.5kb downstream 0.5kb downstream 500 false Chr2: 8601722-8602221 Arabidopsis thaliana
AT2G19920 1.0kb upstream 1.0kb upstream 5666 true Chr2: 8602222-8607887 Arabidopsis thaliana
AT2G19920 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8606888-8607887 Arabidopsis thaliana
AT2G19920 1.0kb downstream 1.0kb downstream 5666 true Chr2: 8601222-8606887 Arabidopsis thaliana
AT2G19920 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8601222-8602221 Arabidopsis thaliana
AT2G19920 2.0kb upstream 2.0kb upstream 6666 true Chr2: 8602222-8608887 Arabidopsis thaliana
AT2G19920 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8606888-8608887 Arabidopsis thaliana
AT2G19920 2.0kb downstream 2.0kb downstream 6666 true Chr2: 8600222-8606887 Arabidopsis thaliana
AT2G19920 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8600222-8602221 Arabidopsis thaliana
AT2G19920 5.0kb upstream 5.0kb upstream 9666 true Chr2: 8602222-8611887 Arabidopsis thaliana
AT2G19920 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8606888-8611887 Arabidopsis thaliana
AT2G19920 5.0kb downstream 5.0kb downstream 9666 true Chr2: 8597222-8606887 Arabidopsis thaliana
AT2G19920 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8597222-8602221 Arabidopsis thaliana
AT2G19920 10.0kb upstream 10.0kb upstream 14666 true Chr2: 8602222-8616887 Arabidopsis thaliana
AT2G19920 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8606888-8616887 Arabidopsis thaliana
AT2G19920 10.0kb downstream 10.0kb downstream 14666 true Chr2: 8592222-8606887 Arabidopsis thaliana
AT2G19920 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8592222-8602221 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332165 5261 Brassicaceae View MSA
123773265 5264 Brassicales-Malvales View MSA
124271757 5266 SBM View MSA
124127716 5268 Malvidae View MSA
124050316 5270 Rosid View MSA
123752294 5271 Pentapetalae View MSA
122797649 5272 Eudicot View MSA
122047757 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.314        
cufflinks 0.884        
cufflinks 0.18     Low Low
cufflinks 0.634        
cufflinks 0.154     Low Low
cufflinks 1.033       High

0 Strain