Gene : Bradi1g05761 B. distachyon v3.1
Defline:  (1 of 1) PF03118 - Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) Genomic Order:  5029
Name:  ? Bradi1g05761 Secondary Identifier:  ? PAC:32805158
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g05761 0.5kb upstream 0.5kb upstream 2278 true Bd1: 35957012-35959289 Brachypodium distachyon
Bradi1g05761 0.5kb upstream 0.5kb upstream 500 false Bd1: 35958790-35959289 Brachypodium distachyon
Bradi1g05761 0.5kb downstream 0.5kb downstream 2278 true Bd1: 35956512-35958789 Brachypodium distachyon
Bradi1g05761 0.5kb downstream 0.5kb downstream 500 false Bd1: 35956512-35957011 Brachypodium distachyon
Bradi1g05761 1.0kb upstream 1.0kb upstream 2778 true Bd1: 35957012-35959789 Brachypodium distachyon
Bradi1g05761 1.0kb upstream 1.0kb upstream 1000 false Bd1: 35958790-35959789 Brachypodium distachyon
Bradi1g05761 1.0kb downstream 1.0kb downstream 2778 true Bd1: 35956012-35958789 Brachypodium distachyon
Bradi1g05761 1.0kb downstream 1.0kb downstream 1000 false Bd1: 35956012-35957011 Brachypodium distachyon
Bradi1g05761 2.0kb upstream 2.0kb upstream 3778 true Bd1: 35957012-35960789 Brachypodium distachyon
Bradi1g05761 2.0kb upstream 2.0kb upstream 2000 false Bd1: 35958790-35960789 Brachypodium distachyon
Bradi1g05761 2.0kb downstream 2.0kb downstream 3778 true Bd1: 35955012-35958789 Brachypodium distachyon
Bradi1g05761 2.0kb downstream 2.0kb downstream 2000 false Bd1: 35955012-35957011 Brachypodium distachyon
Bradi1g05761 5.0kb upstream 5.0kb upstream 6778 true Bd1: 35957012-35963789 Brachypodium distachyon
Bradi1g05761 5.0kb upstream 5.0kb upstream 5000 false Bd1: 35958790-35963789 Brachypodium distachyon
Bradi1g05761 5.0kb downstream 5.0kb downstream 6778 true Bd1: 35952012-35958789 Brachypodium distachyon
Bradi1g05761 5.0kb downstream 5.0kb downstream 5000 false Bd1: 35952012-35957011 Brachypodium distachyon
Bradi1g05761 10.0kb upstream 10.0kb upstream 11778 true Bd1: 35957012-35968789 Brachypodium distachyon
Bradi1g05761 10.0kb upstream 10.0kb upstream 10000 false Bd1: 35958790-35968789 Brachypodium distachyon
Bradi1g05761 10.0kb downstream 10.0kb downstream 11778 true Bd1: 35947012-35958789 Brachypodium distachyon
Bradi1g05761 10.0kb downstream 10.0kb downstream 10000 false Bd1: 35947012-35957011 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
124586225 5269 Grass View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.101     Low High
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  

0 Strain