Protein Family : DNA-directed RNA polymerase subunit alpha, putative, expressed 124586225

Method ID:  5269 Method Name:  Grass
Sequence Alignment:  View MSA Member Count:  33
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33 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Traes_1BS_6DFE37F47 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_1bs_v1_3424947: 2587-4114
Traes_1BS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_1bs_v1_3483406: 11385-12912
Traes_1DS_9572A5433 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_1ds_v1_1902000: 5638-7165
Traes_2AL_EDD1A0D0B (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1336   ta_iwgsc_2al_v1_6350058: 5609-6944
Traes_2BS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_2bs_v1_5245417: 1118-2645
Traes_2DL_9572A5433 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_2dl_v1_9907837: 155-1682
Traes_3B_6DFE37F47 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_3b_v1_10535981: 2769-4296
Traes_3B_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_3b_v1_10698611: 1017-2544
Traes_4AL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1399   ta_iwgsc_4al_v2_7162728: 2-1400
Traes_4AS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1399   ta_iwgsc_4as_v2_5949307: 9772-11170
Traes_4BL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_4bl_v1_7012057: 159-1686
Traes_4BS_1482BFF9F (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_4bs_v1_4866414: 9773-11300
Traes_4DL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1308   ta_iwgsc_4dl_v3_14466158: 3-1310
Traes_5AS_6DFE37F47 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_5as_v1_1552572: 38245-39772
Traes_5BL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_5bl_v1_10886771: 882-2409
Traes_5DS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_5ds_v1_2780529: 286-1813
Traes_7DL_A83992EF8 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_7dl_v1_3327796: 554-2081
Seita.J010800 (1 of 5) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA S. italica v2.2 1002   scaffold_12: 289671-290672
Bradi1g05761 (1 of 1) PF03118 - Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) B. distachyon v3.1 1778   Bd1: 35957012-35958789
LOC_Os01g57946 (1 of 5) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) O. sativa v7.0 1014   Chr1: 33500853-33501866
LOC_Os10g21328 (1 of 5) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) O. sativa v7.0 1014   Chr10: 10881441-10882454
LOC_Os04g16842 (1 of 5) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) O. sativa v7.0 1014   Chr4: 9159535-9160548
LOC_Os08g15288 (1 of 5) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) O. sativa v7.0 1014   Chr8: 9268045-9269058
Zm00008a021929 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) Z. mays PH207 v1.1 1928   chr05: 166922603-166924530
HORVU5Hr1G065000 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) H. vulgare r1 2070   chr5H: 498731266-498733335
GRMZM5G879235 (1 of 75) 2.7.7.6 - DNA-directed RNA polymerase / RNA polymerase III Z. mays RefGen_V4 1567   Pt: 75623-77189
PhHAL.4G160000 (1 of 2) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. hallii HAL v2.1 1020   Chr04: 17799391-17800410
PhHAL.9G332100 (1 of 2) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. hallii HAL v2.1 1332   Chr09: 38915414-38916745
PhHAL.9G272000 (1 of 5) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA P. hallii HAL v2.1 1007   Chr09: 20677384-20678390
Misin05G095600 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) M. sinensis v7.1 1009   Chr05: 20277447-20278455

33 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Traes_2AL_EDD1A0D0B.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_5AS_6DFE37F47.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_4AL_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_7DL_A83992EF8.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_4BS_1482BFF9F.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_1BS_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_1DS_9572A5433.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_5DS_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_3B_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_4BL_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_4AS_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_2BS_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_1BS_6DFE37F47.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_3B_6DFE37F47.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_5BL_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_4DL_1638411DC.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Traes_2DL_9572A5433.2 T. aestivum v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 17 5269 Grass
Seita.J010800.1.p S. italica v2.2 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5269 Grass
Bradi1g05761.1.p B. distachyon v3.1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5269 Grass
LOC_Os10g21328.1 O. sativa v7.0 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 4 5269 Grass
LOC_Os08g15288.1 O. sativa v7.0 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 4 5269 Grass
LOC_Os04g16842.1 O. sativa v7.0 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 4 5269 Grass
LOC_Os01g57946.1 O. sativa v7.0 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 4 5269 Grass
Zm00008a021929_P01 Z. mays PH207 v1.1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5269 Grass
HORVU5Hr1G065000.5 H. vulgare r1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5269 Grass
GRMZM5G879235_P01 Z. mays RefGen_V4 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5269 Grass
PhHAL.9G332100.1.p P. hallii HAL v2.1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5269 Grass
PhHAL.9G272000.1.p P. hallii HAL v2.1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5269 Grass
PhHAL.4G160000.1.p P. hallii HAL v2.1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5269 Grass
OsKitaake01g354381.1.p O. sativa Kitaake v3.1 124586225 DNA-directed RNA polymerase subunit alpha, putative, expressed 2 5269 Grass