Gene : Bradi1g05740 B. distachyon v3.1
Defline:  (1 of 14) PF00421 - Photosystem II protein (PSII) Genomic Order:  5023
Name:  ? Bradi1g05740 Secondary Identifier:  ? PAC:32798854
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g05740 0.5kb upstream 0.5kb upstream 3433 true Bd1: 35949756-35953188 Brachypodium distachyon
Bradi1g05740 0.5kb upstream 0.5kb upstream 500 false Bd1: 35949756-35950255 Brachypodium distachyon
Bradi1g05740 0.5kb downstream 0.5kb downstream 3433 true Bd1: 35950256-35953688 Brachypodium distachyon
Bradi1g05740 0.5kb downstream 0.5kb downstream 500 false Bd1: 35953189-35953688 Brachypodium distachyon
Bradi1g05740 1.0kb upstream 1.0kb upstream 3933 true Bd1: 35949256-35953188 Brachypodium distachyon
Bradi1g05740 1.0kb upstream 1.0kb upstream 1000 false Bd1: 35949256-35950255 Brachypodium distachyon
Bradi1g05740 1.0kb downstream 1.0kb downstream 3933 true Bd1: 35950256-35954188 Brachypodium distachyon
Bradi1g05740 1.0kb downstream 1.0kb downstream 1000 false Bd1: 35953189-35954188 Brachypodium distachyon
Bradi1g05740 2.0kb upstream 2.0kb upstream 4933 true Bd1: 35948256-35953188 Brachypodium distachyon
Bradi1g05740 2.0kb upstream 2.0kb upstream 2000 false Bd1: 35948256-35950255 Brachypodium distachyon
Bradi1g05740 2.0kb downstream 2.0kb downstream 4933 true Bd1: 35950256-35955188 Brachypodium distachyon
Bradi1g05740 2.0kb downstream 2.0kb downstream 2000 false Bd1: 35953189-35955188 Brachypodium distachyon
Bradi1g05740 5.0kb upstream 5.0kb upstream 7933 true Bd1: 35945256-35953188 Brachypodium distachyon
Bradi1g05740 5.0kb upstream 5.0kb upstream 5000 false Bd1: 35945256-35950255 Brachypodium distachyon
Bradi1g05740 5.0kb downstream 5.0kb downstream 7933 true Bd1: 35950256-35958188 Brachypodium distachyon
Bradi1g05740 5.0kb downstream 5.0kb downstream 5000 false Bd1: 35953189-35958188 Brachypodium distachyon
Bradi1g05740 10.0kb upstream 10.0kb upstream 12933 true Bd1: 35940256-35953188 Brachypodium distachyon
Bradi1g05740 10.0kb upstream 10.0kb upstream 10000 false Bd1: 35940256-35950255 Brachypodium distachyon
Bradi1g05740 10.0kb downstream 10.0kb downstream 12933 true Bd1: 35950256-35963188 Brachypodium distachyon
Bradi1g05740 10.0kb downstream 10.0kb downstream 10000 false Bd1: 35953189-35963188 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584478 5269 Grass View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain