Gene : Bradi1g08400 B. distachyon v3.1
Defline:  (1 of 1) PTHR24423:SF493 - PHYTOCHROME C Genomic Order:  1079
Name:  ? Bradi1g08400 Secondary Identifier:  ? PAC:32797358
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g08400 0.5kb upstream 0.5kb upstream 5708 true Bd1: 5923000-5928707 Brachypodium distachyon
Bradi1g08400 0.5kb upstream 0.5kb upstream 500 false Bd1: 5928208-5928707 Brachypodium distachyon
Bradi1g08400 0.5kb downstream 0.5kb downstream 5708 true Bd1: 5922500-5928207 Brachypodium distachyon
Bradi1g08400 0.5kb downstream 0.5kb downstream 500 false Bd1: 5922500-5922999 Brachypodium distachyon
Bradi1g08400 1.0kb upstream 1.0kb upstream 6208 true Bd1: 5923000-5929207 Brachypodium distachyon
Bradi1g08400 1.0kb upstream 1.0kb upstream 1000 false Bd1: 5928208-5929207 Brachypodium distachyon
Bradi1g08400 1.0kb downstream 1.0kb downstream 6208 true Bd1: 5922000-5928207 Brachypodium distachyon
Bradi1g08400 1.0kb downstream 1.0kb downstream 1000 false Bd1: 5922000-5922999 Brachypodium distachyon
Bradi1g08400 2.0kb upstream 2.0kb upstream 7208 true Bd1: 5923000-5930207 Brachypodium distachyon
Bradi1g08400 2.0kb upstream 2.0kb upstream 2000 false Bd1: 5928208-5930207 Brachypodium distachyon
Bradi1g08400 2.0kb downstream 2.0kb downstream 7208 true Bd1: 5921000-5928207 Brachypodium distachyon
Bradi1g08400 2.0kb downstream 2.0kb downstream 2000 false Bd1: 5921000-5922999 Brachypodium distachyon
Bradi1g08400 5.0kb upstream 5.0kb upstream 10208 true Bd1: 5923000-5933207 Brachypodium distachyon
Bradi1g08400 5.0kb upstream 5.0kb upstream 5000 false Bd1: 5928208-5933207 Brachypodium distachyon
Bradi1g08400 5.0kb downstream 5.0kb downstream 10208 true Bd1: 5918000-5928207 Brachypodium distachyon
Bradi1g08400 5.0kb downstream 5.0kb downstream 5000 false Bd1: 5918000-5922999 Brachypodium distachyon
Bradi1g08400 10.0kb upstream 10.0kb upstream 15208 true Bd1: 5923000-5938207 Brachypodium distachyon
Bradi1g08400 10.0kb upstream 10.0kb upstream 10000 false Bd1: 5928208-5938207 Brachypodium distachyon
Bradi1g08400 10.0kb downstream 10.0kb downstream 15208 true Bd1: 5913000-5928207 Brachypodium distachyon
Bradi1g08400 10.0kb downstream 10.0kb downstream 10000 false Bd1: 5913000-5922999 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026532 5273 Angiosperm View MSA
124569853 5269 Grass View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.083     High  
cufflinks 15.82     High  
cufflinks 19.092     High High
cufflinks 11.095     High  
cufflinks 4.88       Low
cufflinks 15.653     High  
cufflinks 14.906     High  
cufflinks 10.832     High  
cufflinks 14.318     High  
cufflinks 12.16     High  
cufflinks 18.771     High High
cufflinks 15.56     High  
cufflinks 15.041     High  
cufflinks 12.326     High  
cufflinks 6.984       Low
cufflinks 17.242     High  
cufflinks 9.403        
cufflinks 7.513        
cufflinks 13.38     High  
cufflinks 3.324       Low
cufflinks 11.517     High  
cufflinks 19.279     High High
cufflinks 11.152     High  
cufflinks 12.087     High  
cufflinks 12.26     High  
cufflinks 16.724     High  
cufflinks 13.522     High  
cufflinks 16.783     High  
cufflinks 16.639     High  
cufflinks 19.345     High High

0 Strain