Gene : Bradi1g20112 B. distachyon v3.1
Defline:  (1 of 4) PTHR23273//PTHR23273:SF14 - REPLICATION FACTOR A 1, RFA1 Genomic Order:  2516
Name:  ? Bradi1g20112 Secondary Identifier:  ? PAC:32805030
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g20112 0.5kb upstream 0.5kb upstream 2877 true Bd1: 16116057-16118933 Brachypodium distachyon
Bradi1g20112 0.5kb upstream 0.5kb upstream 500 false Bd1: 16118434-16118933 Brachypodium distachyon
Bradi1g20112 0.5kb downstream 0.5kb downstream 2877 true Bd1: 16115557-16118433 Brachypodium distachyon
Bradi1g20112 0.5kb downstream 0.5kb downstream 500 false Bd1: 16115557-16116056 Brachypodium distachyon
Bradi1g20112 1.0kb upstream 1.0kb upstream 3377 true Bd1: 16116057-16119433 Brachypodium distachyon
Bradi1g20112 1.0kb upstream 1.0kb upstream 1000 false Bd1: 16118434-16119433 Brachypodium distachyon
Bradi1g20112 1.0kb downstream 1.0kb downstream 3377 true Bd1: 16115057-16118433 Brachypodium distachyon
Bradi1g20112 1.0kb downstream 1.0kb downstream 1000 false Bd1: 16115057-16116056 Brachypodium distachyon
Bradi1g20112 2.0kb upstream 2.0kb upstream 4377 true Bd1: 16116057-16120433 Brachypodium distachyon
Bradi1g20112 2.0kb upstream 2.0kb upstream 2000 false Bd1: 16118434-16120433 Brachypodium distachyon
Bradi1g20112 2.0kb downstream 2.0kb downstream 4377 true Bd1: 16114057-16118433 Brachypodium distachyon
Bradi1g20112 2.0kb downstream 2.0kb downstream 2000 false Bd1: 16114057-16116056 Brachypodium distachyon
Bradi1g20112 5.0kb upstream 5.0kb upstream 7377 true Bd1: 16116057-16123433 Brachypodium distachyon
Bradi1g20112 5.0kb upstream 5.0kb upstream 5000 false Bd1: 16118434-16123433 Brachypodium distachyon
Bradi1g20112 5.0kb downstream 5.0kb downstream 7377 true Bd1: 16111057-16118433 Brachypodium distachyon
Bradi1g20112 5.0kb downstream 5.0kb downstream 5000 false Bd1: 16111057-16116056 Brachypodium distachyon
Bradi1g20112 10.0kb upstream 10.0kb upstream 12377 true Bd1: 16116057-16128433 Brachypodium distachyon
Bradi1g20112 10.0kb upstream 10.0kb upstream 10000 false Bd1: 16118434-16128433 Brachypodium distachyon
Bradi1g20112 10.0kb downstream 10.0kb downstream 12377 true Bd1: 16106057-16118433 Brachypodium distachyon
Bradi1g20112 10.0kb downstream 10.0kb downstream 10000 false Bd1: 16106057-16116056 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
124590273 5269 Grass View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.056     Low High
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain