Gene : Bradi1g37130 B. distachyon v3.1
Defline:  (1 of 1) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  4739
Name:  ? Bradi1g37130 Secondary Identifier:  ? PAC:32791807
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g37130 0.5kb upstream 0.5kb upstream 14587 true Bd1: 33050357-33064943 Brachypodium distachyon
Bradi1g37130 0.5kb upstream 0.5kb upstream 500 false Bd1: 33064444-33064943 Brachypodium distachyon
Bradi1g37130 0.5kb downstream 0.5kb downstream 14587 true Bd1: 33049857-33064443 Brachypodium distachyon
Bradi1g37130 0.5kb downstream 0.5kb downstream 500 false Bd1: 33049857-33050356 Brachypodium distachyon
Bradi1g37130 1.0kb upstream 1.0kb upstream 15087 true Bd1: 33050357-33065443 Brachypodium distachyon
Bradi1g37130 1.0kb upstream 1.0kb upstream 1000 false Bd1: 33064444-33065443 Brachypodium distachyon
Bradi1g37130 1.0kb downstream 1.0kb downstream 15087 true Bd1: 33049357-33064443 Brachypodium distachyon
Bradi1g37130 1.0kb downstream 1.0kb downstream 1000 false Bd1: 33049357-33050356 Brachypodium distachyon
Bradi1g37130 2.0kb upstream 2.0kb upstream 16087 true Bd1: 33050357-33066443 Brachypodium distachyon
Bradi1g37130 2.0kb upstream 2.0kb upstream 2000 false Bd1: 33064444-33066443 Brachypodium distachyon
Bradi1g37130 2.0kb downstream 2.0kb downstream 16087 true Bd1: 33048357-33064443 Brachypodium distachyon
Bradi1g37130 2.0kb downstream 2.0kb downstream 2000 false Bd1: 33048357-33050356 Brachypodium distachyon
Bradi1g37130 5.0kb upstream 5.0kb upstream 19087 true Bd1: 33050357-33069443 Brachypodium distachyon
Bradi1g37130 5.0kb upstream 5.0kb upstream 5000 false Bd1: 33064444-33069443 Brachypodium distachyon
Bradi1g37130 5.0kb downstream 5.0kb downstream 19087 true Bd1: 33045357-33064443 Brachypodium distachyon
Bradi1g37130 5.0kb downstream 5.0kb downstream 5000 false Bd1: 33045357-33050356 Brachypodium distachyon
Bradi1g37130 10.0kb upstream 10.0kb upstream 24087 true Bd1: 33050357-33074443 Brachypodium distachyon
Bradi1g37130 10.0kb upstream 10.0kb upstream 10000 false Bd1: 33064444-33074443 Brachypodium distachyon
Bradi1g37130 10.0kb downstream 10.0kb downstream 24087 true Bd1: 33040357-33064443 Brachypodium distachyon
Bradi1g37130 10.0kb downstream 10.0kb downstream 10000 false Bd1: 33040357-33050356 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583371 5269 Grass View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.323        
cufflinks 6.504        
cufflinks 6.527        
cufflinks 4.336        
cufflinks 2.001       Low
cufflinks 6.015        
cufflinks 5.408        
cufflinks 4.546        
cufflinks 5.923        
cufflinks 4.41        
cufflinks 5.074        
cufflinks 5.425        
cufflinks 3.971        
cufflinks 3.542        
cufflinks 2.35       Low
cufflinks 6.427        
cufflinks 5.584        
cufflinks 8.713       High
cufflinks 8.021       High
cufflinks 1.552       Low
cufflinks 4.79        
cufflinks 6.649        
cufflinks 4.399        
cufflinks 4.644        
cufflinks 4.836        
cufflinks 5.429        
cufflinks 5.103        
cufflinks 5.489        
cufflinks 5.369        
cufflinks 6.367        

0 Strain