Gene : Bradi5g19970 B. distachyon v3.1
Defline:  (1 of 1) KOG0105//KOG0106//KOG0131 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Splicing factor 3b, subunit 4 Genomic Order:  2313
Name:  ? Bradi5g19970 Secondary Identifier:  ? PAC:32809423
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g19970 0.5kb upstream 0.5kb upstream 3055 true Bd5: 23042178-23045232 Brachypodium distachyon
Bradi5g19970 0.5kb upstream 0.5kb upstream 500 false Bd5: 23044733-23045232 Brachypodium distachyon
Bradi5g19970 0.5kb downstream 0.5kb downstream 3055 true Bd5: 23041678-23044732 Brachypodium distachyon
Bradi5g19970 0.5kb downstream 0.5kb downstream 500 false Bd5: 23041678-23042177 Brachypodium distachyon
Bradi5g19970 1.0kb upstream 1.0kb upstream 3555 true Bd5: 23042178-23045732 Brachypodium distachyon
Bradi5g19970 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23044733-23045732 Brachypodium distachyon
Bradi5g19970 1.0kb downstream 1.0kb downstream 3555 true Bd5: 23041178-23044732 Brachypodium distachyon
Bradi5g19970 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23041178-23042177 Brachypodium distachyon
Bradi5g19970 2.0kb upstream 2.0kb upstream 4555 true Bd5: 23042178-23046732 Brachypodium distachyon
Bradi5g19970 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23044733-23046732 Brachypodium distachyon
Bradi5g19970 2.0kb downstream 2.0kb downstream 4555 true Bd5: 23040178-23044732 Brachypodium distachyon
Bradi5g19970 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23040178-23042177 Brachypodium distachyon
Bradi5g19970 5.0kb upstream 5.0kb upstream 7555 true Bd5: 23042178-23049732 Brachypodium distachyon
Bradi5g19970 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23044733-23049732 Brachypodium distachyon
Bradi5g19970 5.0kb downstream 5.0kb downstream 7555 true Bd5: 23037178-23044732 Brachypodium distachyon
Bradi5g19970 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23037178-23042177 Brachypodium distachyon
Bradi5g19970 10.0kb upstream 10.0kb upstream 12555 true Bd5: 23042178-23054732 Brachypodium distachyon
Bradi5g19970 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23044733-23054732 Brachypodium distachyon
Bradi5g19970 10.0kb downstream 10.0kb downstream 12555 true Bd5: 23032178-23044732 Brachypodium distachyon
Bradi5g19970 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23032178-23042177 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577662 5269 Grass View MSA
122043874 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310205 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.759     High  
cufflinks 85.156     High  
cufflinks 107.813     High  
cufflinks 100.316     High  
cufflinks 40.884     High  
cufflinks 77.792     High  
cufflinks 87.225     High  
cufflinks 52.418     High  
cufflinks 60.274     High  
cufflinks 118.888     High  
cufflinks 106.5     High  
cufflinks 78.162     High  
cufflinks 112.181     High  
cufflinks 121.901     High  
cufflinks 76.634     High  
cufflinks 90.728     High  
cufflinks 81.183     High  
cufflinks 3.833       Low
cufflinks 46.768     High  
cufflinks 52.212     High  
cufflinks 34.631     High  
cufflinks 76.743     High  
cufflinks 58.432     High  
cufflinks 66.179     High  
cufflinks 88.889     High  
cufflinks 131.099     High  
cufflinks 136.186     High  
cufflinks 123.547     High  
cufflinks 106.631     High  
cufflinks 32.293     High  

0 Strain