Gene : Bradi1g48264 B. distachyon v3.1
Defline:  (1 of 1) PTHR11140 - PRE-MRNA SPLICING FACTOR PRP8 Genomic Order:  6028
Name:  ? Bradi1g48264 Secondary Identifier:  ? PAC:32798387
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g48264 0.5kb upstream 0.5kb upstream 10706 true Bd1: 47048301-47059006 Brachypodium distachyon
Bradi1g48264 0.5kb upstream 0.5kb upstream 500 false Bd1: 47048301-47048800 Brachypodium distachyon
Bradi1g48264 0.5kb downstream 0.5kb downstream 10706 true Bd1: 47048801-47059506 Brachypodium distachyon
Bradi1g48264 0.5kb downstream 0.5kb downstream 500 false Bd1: 47059007-47059506 Brachypodium distachyon
Bradi1g48264 1.0kb upstream 1.0kb upstream 11206 true Bd1: 47047801-47059006 Brachypodium distachyon
Bradi1g48264 1.0kb upstream 1.0kb upstream 1000 false Bd1: 47047801-47048800 Brachypodium distachyon
Bradi1g48264 1.0kb downstream 1.0kb downstream 11206 true Bd1: 47048801-47060006 Brachypodium distachyon
Bradi1g48264 1.0kb downstream 1.0kb downstream 1000 false Bd1: 47059007-47060006 Brachypodium distachyon
Bradi1g48264 2.0kb upstream 2.0kb upstream 12206 true Bd1: 47046801-47059006 Brachypodium distachyon
Bradi1g48264 2.0kb upstream 2.0kb upstream 2000 false Bd1: 47046801-47048800 Brachypodium distachyon
Bradi1g48264 2.0kb downstream 2.0kb downstream 12206 true Bd1: 47048801-47061006 Brachypodium distachyon
Bradi1g48264 2.0kb downstream 2.0kb downstream 2000 false Bd1: 47059007-47061006 Brachypodium distachyon
Bradi1g48264 5.0kb upstream 5.0kb upstream 15206 true Bd1: 47043801-47059006 Brachypodium distachyon
Bradi1g48264 5.0kb upstream 5.0kb upstream 5000 false Bd1: 47043801-47048800 Brachypodium distachyon
Bradi1g48264 5.0kb downstream 5.0kb downstream 15206 true Bd1: 47048801-47064006 Brachypodium distachyon
Bradi1g48264 5.0kb downstream 5.0kb downstream 5000 false Bd1: 47059007-47064006 Brachypodium distachyon
Bradi1g48264 10.0kb upstream 10.0kb upstream 20206 true Bd1: 47038801-47059006 Brachypodium distachyon
Bradi1g48264 10.0kb upstream 10.0kb upstream 10000 false Bd1: 47038801-47048800 Brachypodium distachyon
Bradi1g48264 10.0kb downstream 10.0kb downstream 20206 true Bd1: 47048801-47069006 Brachypodium distachyon
Bradi1g48264 10.0kb downstream 10.0kb downstream 10000 false Bd1: 47059007-47069006 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570659 5269 Grass View MSA
122042233 5273 Angiosperm View MSA
121346316 5274 Embryophyte View MSA
123424107 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.828     High  
cufflinks 58.468     High  
cufflinks 58.461     High  
cufflinks 30.929     High  
cufflinks 8.098       Low
cufflinks 51.318     High  
cufflinks 50.312     High  
cufflinks 31.124     High  
cufflinks 44.977     High  
cufflinks 17.364     High  
cufflinks 48.443     High  
cufflinks 51.647     High  
cufflinks 31.544     High  
cufflinks 26.799     High  
cufflinks 12.736     High Low
cufflinks 48.975     High  
cufflinks 12.456     High Low
cufflinks 67.197     High High
cufflinks 25.243     High  
cufflinks 9.685       Low
cufflinks 21.245     High  
cufflinks 50.457     High  
cufflinks 31.805     High  
cufflinks 31.967     High  
cufflinks 33.155     High  
cufflinks 42.776     High  
cufflinks 35.053     High  
cufflinks 40.972     High  
cufflinks 40.112     High  
cufflinks 51.424     High  

0 Strain