Gene : Bradi1g55350 B. distachyon v3.1
Defline:  (1 of 2) PTHR23079//PTHR23079:SF1 - RNA-DEPENDENT RNA POLYMERASE // PROTEIN RRF-3 Genomic Order:  6929
Name:  ? Bradi1g55350 Secondary Identifier:  ? PAC:32804283
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g55350 0.5kb upstream 0.5kb upstream 9659 true Bd1: 53942538-53952196 Brachypodium distachyon
Bradi1g55350 0.5kb upstream 0.5kb upstream 500 false Bd1: 53942538-53943037 Brachypodium distachyon
Bradi1g55350 0.5kb downstream 0.5kb downstream 9659 true Bd1: 53943038-53952696 Brachypodium distachyon
Bradi1g55350 0.5kb downstream 0.5kb downstream 500 false Bd1: 53952197-53952696 Brachypodium distachyon
Bradi1g55350 1.0kb upstream 1.0kb upstream 10159 true Bd1: 53942038-53952196 Brachypodium distachyon
Bradi1g55350 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53942038-53943037 Brachypodium distachyon
Bradi1g55350 1.0kb downstream 1.0kb downstream 10159 true Bd1: 53943038-53953196 Brachypodium distachyon
Bradi1g55350 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53952197-53953196 Brachypodium distachyon
Bradi1g55350 2.0kb upstream 2.0kb upstream 11159 true Bd1: 53941038-53952196 Brachypodium distachyon
Bradi1g55350 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53941038-53943037 Brachypodium distachyon
Bradi1g55350 2.0kb downstream 2.0kb downstream 11159 true Bd1: 53943038-53954196 Brachypodium distachyon
Bradi1g55350 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53952197-53954196 Brachypodium distachyon
Bradi1g55350 5.0kb upstream 5.0kb upstream 14159 true Bd1: 53938038-53952196 Brachypodium distachyon
Bradi1g55350 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53938038-53943037 Brachypodium distachyon
Bradi1g55350 5.0kb downstream 5.0kb downstream 14159 true Bd1: 53943038-53957196 Brachypodium distachyon
Bradi1g55350 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53952197-53957196 Brachypodium distachyon
Bradi1g55350 10.0kb upstream 10.0kb upstream 19159 true Bd1: 53933038-53952196 Brachypodium distachyon
Bradi1g55350 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53933038-53943037 Brachypodium distachyon
Bradi1g55350 10.0kb downstream 10.0kb downstream 19159 true Bd1: 53943038-53962196 Brachypodium distachyon
Bradi1g55350 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53952197-53962196 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588153 5269 Grass View MSA
122045596 5273 Angiosperm View MSA
121346387 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.17        
cufflinks 0.409        
cufflinks 0.516       High
cufflinks 0.279        
cufflinks 0.096       Low
cufflinks 0.346        
cufflinks 0.362        
cufflinks 0.294        
cufflinks 0.325        
cufflinks 0.231        
cufflinks 0.441        
cufflinks 0.349        
cufflinks 0.253        
cufflinks 0.315        
cufflinks 0.177        
cufflinks 0.324        
cufflinks 0.17        
cufflinks 0.35        
cufflinks 0.308        
cufflinks 0.062     Low Low
cufflinks 0.308        
cufflinks 0.344        
cufflinks 0.269        
cufflinks 0.27        
cufflinks 0.258        
cufflinks 0.457        
cufflinks 0.351        
cufflinks 0.481       High
cufflinks 0.441        
cufflinks 0.391        

0 Strain