Gene : Bradi5g08920 B. distachyon v3.1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF118 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPD, CHLOROPLASTIC Genomic Order:  888
Name:  ? Bradi5g08920 Secondary Identifier:  ? PAC:32807894
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g08920 0.5kb upstream 0.5kb upstream 6280 true Bd5: 12188364-12194643 Brachypodium distachyon
Bradi5g08920 0.5kb upstream 0.5kb upstream 500 false Bd5: 12188364-12188863 Brachypodium distachyon
Bradi5g08920 0.5kb downstream 0.5kb downstream 6280 true Bd5: 12188864-12195143 Brachypodium distachyon
Bradi5g08920 0.5kb downstream 0.5kb downstream 500 false Bd5: 12194644-12195143 Brachypodium distachyon
Bradi5g08920 1.0kb upstream 1.0kb upstream 6780 true Bd5: 12187864-12194643 Brachypodium distachyon
Bradi5g08920 1.0kb upstream 1.0kb upstream 1000 false Bd5: 12187864-12188863 Brachypodium distachyon
Bradi5g08920 1.0kb downstream 1.0kb downstream 6780 true Bd5: 12188864-12195643 Brachypodium distachyon
Bradi5g08920 1.0kb downstream 1.0kb downstream 1000 false Bd5: 12194644-12195643 Brachypodium distachyon
Bradi5g08920 2.0kb upstream 2.0kb upstream 7780 true Bd5: 12186864-12194643 Brachypodium distachyon
Bradi5g08920 2.0kb upstream 2.0kb upstream 2000 false Bd5: 12186864-12188863 Brachypodium distachyon
Bradi5g08920 2.0kb downstream 2.0kb downstream 7780 true Bd5: 12188864-12196643 Brachypodium distachyon
Bradi5g08920 2.0kb downstream 2.0kb downstream 2000 false Bd5: 12194644-12196643 Brachypodium distachyon
Bradi5g08920 5.0kb upstream 5.0kb upstream 10780 true Bd5: 12183864-12194643 Brachypodium distachyon
Bradi5g08920 5.0kb upstream 5.0kb upstream 5000 false Bd5: 12183864-12188863 Brachypodium distachyon
Bradi5g08920 5.0kb downstream 5.0kb downstream 10780 true Bd5: 12188864-12199643 Brachypodium distachyon
Bradi5g08920 5.0kb downstream 5.0kb downstream 5000 false Bd5: 12194644-12199643 Brachypodium distachyon
Bradi5g08920 10.0kb upstream 10.0kb upstream 15780 true Bd5: 12178864-12194643 Brachypodium distachyon
Bradi5g08920 10.0kb upstream 10.0kb upstream 10000 false Bd5: 12178864-12188863 Brachypodium distachyon
Bradi5g08920 10.0kb downstream 10.0kb downstream 15780 true Bd5: 12188864-12204643 Brachypodium distachyon
Bradi5g08920 10.0kb downstream 10.0kb downstream 10000 false Bd5: 12194644-12204643 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041323 5273 Angiosperm View MSA
124582251 5269 Grass View MSA
121345985 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.154     High  
cufflinks 21.423     High  
cufflinks 22.576     High  
cufflinks 19.432     High  
cufflinks 10.03     High  
cufflinks 19.708     High  
cufflinks 18.028     High  
cufflinks 17.663     High  
cufflinks 17.88     High  
cufflinks 13.539     High  
cufflinks 22.815     High  
cufflinks 23.252     High  
cufflinks 31.914     High High
cufflinks 27.513     High High
cufflinks 16.269     High  
cufflinks 21.167     High  
cufflinks 11.032     High  
cufflinks 6.408       Low
cufflinks 9.351        
cufflinks 4.61       Low
cufflinks 6.873       Low
cufflinks 22.721     High  
cufflinks 18.205     High  
cufflinks 18.131     High  
cufflinks 15.959     High  
cufflinks 20.928     High  
cufflinks 28.695     High High
cufflinks 19.601     High  
cufflinks 20.318     High  
cufflinks 11.479     High  

0 Strain