Gene : Bradi3g16920 B. distachyon v3.1
Defline:  (1 of 2) K03163 - DNA topoisomerase I [EC:5.99.1.2] (TOP1) Genomic Order:  2125
Name:  ? Bradi3g16920 Secondary Identifier:  ? PAC:32823258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g16920 0.5kb upstream 0.5kb upstream 7085 true Bd3: 15100282-15107366 Brachypodium distachyon
Bradi3g16920 0.5kb upstream 0.5kb upstream 500 false Bd3: 15106867-15107366 Brachypodium distachyon
Bradi3g16920 0.5kb downstream 0.5kb downstream 7085 true Bd3: 15099782-15106866 Brachypodium distachyon
Bradi3g16920 0.5kb downstream 0.5kb downstream 500 false Bd3: 15099782-15100281 Brachypodium distachyon
Bradi3g16920 1.0kb upstream 1.0kb upstream 7585 true Bd3: 15100282-15107866 Brachypodium distachyon
Bradi3g16920 1.0kb upstream 1.0kb upstream 1000 false Bd3: 15106867-15107866 Brachypodium distachyon
Bradi3g16920 1.0kb downstream 1.0kb downstream 7585 true Bd3: 15099282-15106866 Brachypodium distachyon
Bradi3g16920 1.0kb downstream 1.0kb downstream 1000 false Bd3: 15099282-15100281 Brachypodium distachyon
Bradi3g16920 2.0kb upstream 2.0kb upstream 8585 true Bd3: 15100282-15108866 Brachypodium distachyon
Bradi3g16920 2.0kb upstream 2.0kb upstream 2000 false Bd3: 15106867-15108866 Brachypodium distachyon
Bradi3g16920 2.0kb downstream 2.0kb downstream 8585 true Bd3: 15098282-15106866 Brachypodium distachyon
Bradi3g16920 2.0kb downstream 2.0kb downstream 2000 false Bd3: 15098282-15100281 Brachypodium distachyon
Bradi3g16920 5.0kb upstream 5.0kb upstream 11585 true Bd3: 15100282-15111866 Brachypodium distachyon
Bradi3g16920 5.0kb upstream 5.0kb upstream 5000 false Bd3: 15106867-15111866 Brachypodium distachyon
Bradi3g16920 5.0kb downstream 5.0kb downstream 11585 true Bd3: 15095282-15106866 Brachypodium distachyon
Bradi3g16920 5.0kb downstream 5.0kb downstream 5000 false Bd3: 15095282-15100281 Brachypodium distachyon
Bradi3g16920 10.0kb upstream 10.0kb upstream 16585 true Bd3: 15100282-15116866 Brachypodium distachyon
Bradi3g16920 10.0kb upstream 10.0kb upstream 10000 false Bd3: 15106867-15116866 Brachypodium distachyon
Bradi3g16920 10.0kb downstream 10.0kb downstream 16585 true Bd3: 15090282-15106866 Brachypodium distachyon
Bradi3g16920 10.0kb downstream 10.0kb downstream 10000 false Bd3: 15090282-15100281 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580080 5269 Grass View MSA
122043821 5273 Angiosperm View MSA
121346629 5274 Embryophyte View MSA
123428492 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.188     High  
cufflinks 20.012     High  
cufflinks 28.622     High High
cufflinks 14.675     High  
cufflinks 10.293     High Low
cufflinks 18.012     High  
cufflinks 16.832     High  
cufflinks 14.972     High  
cufflinks 17.543     High  
cufflinks 18.786     High  
cufflinks 20.311     High  
cufflinks 19.664     High  
cufflinks 15.183     High  
cufflinks 13.549     High  
cufflinks 12.738     High  
cufflinks 19.8     High  
cufflinks 12.405     High  
cufflinks 22.968     High  
cufflinks 11.661        
cufflinks 5.149       Low
cufflinks 10.065       Low
cufflinks 31.009     High High
cufflinks 15.031     High  
cufflinks 14.915     High  
cufflinks 14.786     High  
cufflinks 25.238     High High
cufflinks 16.732     High  
cufflinks 25.431     High High
cufflinks 25.784     High High
cufflinks 16.802     High  

0 Strain