Gene : Bradi3g52580 B. distachyon v3.1
Defline:  (1 of 1) PF03161 - LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Genomic Order:  6531
Name:  ? Bradi3g52580 Secondary Identifier:  ? PAC:32823288
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52580 0.5kb upstream 0.5kb upstream 3789 true Bd3: 53232932-53236720 Brachypodium distachyon
Bradi3g52580 0.5kb upstream 0.5kb upstream 500 false Bd3: 53232932-53233431 Brachypodium distachyon
Bradi3g52580 0.5kb downstream 0.5kb downstream 3789 true Bd3: 53233432-53237220 Brachypodium distachyon
Bradi3g52580 0.5kb downstream 0.5kb downstream 500 false Bd3: 53236721-53237220 Brachypodium distachyon
Bradi3g52580 1.0kb upstream 1.0kb upstream 4289 true Bd3: 53232432-53236720 Brachypodium distachyon
Bradi3g52580 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53232432-53233431 Brachypodium distachyon
Bradi3g52580 1.0kb downstream 1.0kb downstream 4289 true Bd3: 53233432-53237720 Brachypodium distachyon
Bradi3g52580 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53236721-53237720 Brachypodium distachyon
Bradi3g52580 2.0kb upstream 2.0kb upstream 5289 true Bd3: 53231432-53236720 Brachypodium distachyon
Bradi3g52580 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53231432-53233431 Brachypodium distachyon
Bradi3g52580 2.0kb downstream 2.0kb downstream 5289 true Bd3: 53233432-53238720 Brachypodium distachyon
Bradi3g52580 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53236721-53238720 Brachypodium distachyon
Bradi3g52580 5.0kb upstream 5.0kb upstream 8289 true Bd3: 53228432-53236720 Brachypodium distachyon
Bradi3g52580 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53228432-53233431 Brachypodium distachyon
Bradi3g52580 5.0kb downstream 5.0kb downstream 8289 true Bd3: 53233432-53241720 Brachypodium distachyon
Bradi3g52580 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53236721-53241720 Brachypodium distachyon
Bradi3g52580 10.0kb upstream 10.0kb upstream 13289 true Bd3: 53223432-53236720 Brachypodium distachyon
Bradi3g52580 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53223432-53233431 Brachypodium distachyon
Bradi3g52580 10.0kb downstream 10.0kb downstream 13289 true Bd3: 53233432-53246720 Brachypodium distachyon
Bradi3g52580 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53236721-53246720 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569392 5269 Grass View MSA
122047377 5273 Angiosperm View MSA
121348028 5274 Embryophyte View MSA
123380709 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.666        
cufflinks 16.286     High High
cufflinks 10.996     High  
cufflinks 13.575     High High
cufflinks 3.985       Low
cufflinks 12.794     High  
cufflinks 13.449     High High
cufflinks 10.251     High  
cufflinks 9.579     High  
cufflinks 9.802        
cufflinks 7.56        
cufflinks 12.368     High  
cufflinks 5.647        
cufflinks 5.253        
cufflinks 7.37        
cufflinks 13.414     High High
cufflinks 7.463        
cufflinks 3.718       Low
cufflinks 6.635        
cufflinks 2.203       Low
cufflinks 6.197        
cufflinks 11.533     High  
cufflinks 8.133        
cufflinks 8.891        
cufflinks 11.773     High  
cufflinks 10.709        
cufflinks 4.587       Low
cufflinks 9.784        
cufflinks 10.48        
cufflinks 12.402     High  

0 Strain