Gene : Bradi4g18320 B. distachyon v3.1
Defline:  (1 of 2) KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins Genomic Order:  2420
Name:  ? Bradi4g18320 Secondary Identifier:  ? PAC:32783559
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g18320 0.5kb upstream 0.5kb upstream 9673 true Bd4: 20427306-20436978 Brachypodium distachyon
Bradi4g18320 0.5kb upstream 0.5kb upstream 500 false Bd4: 20436479-20436978 Brachypodium distachyon
Bradi4g18320 0.5kb downstream 0.5kb downstream 9673 true Bd4: 20426806-20436478 Brachypodium distachyon
Bradi4g18320 0.5kb downstream 0.5kb downstream 500 false Bd4: 20426806-20427305 Brachypodium distachyon
Bradi4g18320 1.0kb upstream 1.0kb upstream 10173 true Bd4: 20427306-20437478 Brachypodium distachyon
Bradi4g18320 1.0kb upstream 1.0kb upstream 1000 false Bd4: 20436479-20437478 Brachypodium distachyon
Bradi4g18320 1.0kb downstream 1.0kb downstream 10173 true Bd4: 20426306-20436478 Brachypodium distachyon
Bradi4g18320 1.0kb downstream 1.0kb downstream 1000 false Bd4: 20426306-20427305 Brachypodium distachyon
Bradi4g18320 2.0kb upstream 2.0kb upstream 11173 true Bd4: 20427306-20438478 Brachypodium distachyon
Bradi4g18320 2.0kb upstream 2.0kb upstream 2000 false Bd4: 20436479-20438478 Brachypodium distachyon
Bradi4g18320 2.0kb downstream 2.0kb downstream 11173 true Bd4: 20425306-20436478 Brachypodium distachyon
Bradi4g18320 2.0kb downstream 2.0kb downstream 2000 false Bd4: 20425306-20427305 Brachypodium distachyon
Bradi4g18320 5.0kb upstream 5.0kb upstream 14173 true Bd4: 20427306-20441478 Brachypodium distachyon
Bradi4g18320 5.0kb upstream 5.0kb upstream 5000 false Bd4: 20436479-20441478 Brachypodium distachyon
Bradi4g18320 5.0kb downstream 5.0kb downstream 14173 true Bd4: 20422306-20436478 Brachypodium distachyon
Bradi4g18320 5.0kb downstream 5.0kb downstream 5000 false Bd4: 20422306-20427305 Brachypodium distachyon
Bradi4g18320 10.0kb upstream 10.0kb upstream 19173 true Bd4: 20427306-20446478 Brachypodium distachyon
Bradi4g18320 10.0kb upstream 10.0kb upstream 10000 false Bd4: 20436479-20446478 Brachypodium distachyon
Bradi4g18320 10.0kb downstream 10.0kb downstream 19173 true Bd4: 20417306-20436478 Brachypodium distachyon
Bradi4g18320 10.0kb downstream 10.0kb downstream 10000 false Bd4: 20417306-20427305 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
124590273 5269 Grass View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.634        
cufflinks 2.904        
cufflinks 2.191        
cufflinks 2.17        
cufflinks 2.123        
cufflinks 2.699        
cufflinks 2.525        
cufflinks 3.194        
cufflinks 3.629        
cufflinks 1.563        
cufflinks 1.813        
cufflinks 2.688        
cufflinks 2.186        
cufflinks 1.356       Low
cufflinks 1.527       Low
cufflinks 2.53        
cufflinks 2.172        
cufflinks 4.185       High
cufflinks 4.254       High
cufflinks 1.774        
cufflinks 4.103       High
cufflinks 3.1        
cufflinks 3.81       High
cufflinks 3.364        
cufflinks 2.812        
cufflinks 2.078        
cufflinks 3.841       High
cufflinks 2.317        
cufflinks 2.167        
cufflinks 3.094        

0 Strain