Gene : Pp3c16_10470 P. patens v3.3
Defline:  (1 of 1) PTHR13360:SF1 - ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 Genomic Order:  540
Name:  ? Pp3c16_10470 Secondary Identifier:  ? PAC:32986844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_10470 0.5kb upstream 0.5kb upstream 4926 true Chr16: 6573121-6578046 Physcomitrium patens
Pp3c16_10470 0.5kb upstream 0.5kb upstream 500 false Chr16: 6577547-6578046 Physcomitrium patens
Pp3c16_10470 0.5kb downstream 0.5kb downstream 4926 true Chr16: 6572621-6577546 Physcomitrium patens
Pp3c16_10470 0.5kb downstream 0.5kb downstream 500 false Chr16: 6572621-6573120 Physcomitrium patens
Pp3c16_10470 1.0kb upstream 1.0kb upstream 5426 true Chr16: 6573121-6578546 Physcomitrium patens
Pp3c16_10470 1.0kb upstream 1.0kb upstream 1000 false Chr16: 6577547-6578546 Physcomitrium patens
Pp3c16_10470 1.0kb downstream 1.0kb downstream 5426 true Chr16: 6572121-6577546 Physcomitrium patens
Pp3c16_10470 1.0kb downstream 1.0kb downstream 1000 false Chr16: 6572121-6573120 Physcomitrium patens
Pp3c16_10470 2.0kb upstream 2.0kb upstream 6426 true Chr16: 6573121-6579546 Physcomitrium patens
Pp3c16_10470 2.0kb upstream 2.0kb upstream 2000 false Chr16: 6577547-6579546 Physcomitrium patens
Pp3c16_10470 2.0kb downstream 2.0kb downstream 6426 true Chr16: 6571121-6577546 Physcomitrium patens
Pp3c16_10470 2.0kb downstream 2.0kb downstream 2000 false Chr16: 6571121-6573120 Physcomitrium patens
Pp3c16_10470 5.0kb upstream 5.0kb upstream 9426 true Chr16: 6573121-6582546 Physcomitrium patens
Pp3c16_10470 5.0kb upstream 5.0kb upstream 5000 false Chr16: 6577547-6582546 Physcomitrium patens
Pp3c16_10470 5.0kb downstream 5.0kb downstream 9426 true Chr16: 6568121-6577546 Physcomitrium patens
Pp3c16_10470 5.0kb downstream 5.0kb downstream 5000 false Chr16: 6568121-6573120 Physcomitrium patens
Pp3c16_10470 10.0kb upstream 10.0kb upstream 14426 true Chr16: 6573121-6587546 Physcomitrium patens
Pp3c16_10470 10.0kb upstream 10.0kb upstream 10000 false Chr16: 6577547-6587546 Physcomitrium patens
Pp3c16_10470 10.0kb downstream 10.0kb downstream 14426 true Chr16: 6563121-6577546 Physcomitrium patens
Pp3c16_10470 10.0kb downstream 10.0kb downstream 10000 false Chr16: 6563121-6573120 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346215 5274 Embryophyte View MSA
123426629 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.474        
cufflinks 3.934        
cufflinks 8.741       High
cufflinks 7.047        
cufflinks 6.435        
cufflinks 1.961       Low
cufflinks 9.049       High
cufflinks 3.876        
cufflinks 6.607        
cufflinks 7.599       High
cufflinks 6.417        
cufflinks 3.653        
cufflinks 4.453        
cufflinks 6.491        
cufflinks 5.636        
cufflinks 1.889       Low
cufflinks 3.279        
cufflinks 6.53        
cufflinks 5.83        
cufflinks 2.898       Low
cufflinks 5.353        
cufflinks 7.144        
cufflinks 4.937        
cufflinks 3.645        
cufflinks 6.569        
cufflinks 6.051        
cufflinks 5.679        
cufflinks 4.885        
cufflinks 1.747       Low
cufflinks 7.186        

0 Strain