Protein Domain : IPR016460

Type:  Family Name:  Coatomer beta subunit (COPB1)
Description:  Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This group represents the coatomer beta subunit. Short Name:  COPB1

0 Child Features

4 Contains

DB identifier Type Name
IPR016024 Domain Armadillo-type fold
IPR011989 Domain Armadillo-like helical
IPR002553 Domain Clathrin/coatomer adaptor, adaptin-like, N-terminal
IPR011710 Domain Coatomer beta subunit, C-terminal

2 Cross Referencess

Identifier
PTHR10635
PIRSF005727

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0006886 IPR016460
GO:0005737 IPR016460

2 Ontology Annotations

GO Term Gene Name
GO:0006886 IPR016460
GO:0005737 IPR016460

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
160340 D8T279 PAC:15420382 Selaginella moellendorffii 960  
evm.TU.contig_32953.1 PAC:16430181 Carica papaya 881  
evm.model.supercontig_23.23 PAC:16414231 Carica papaya 150  
evm.model.supercontig_23.22 PAC:16414230 Carica papaya 526  
evm.model.supercontig_2829.1 PAC:16416042 Carica papaya 68  
29848.m004454 B9RNM4 PAC:16811111 Ricinus communis 819  
Cucsa.192140.1 PAC:16967926 Cucumis sativus 950  
orange1.1g048218m A0A067FIT5 PAC:18109114 Citrus sinensis 948  
orange1.1g002905m A0A067FV47 PAC:18109079 Citrus sinensis 867  
orange1.1g002235m A0A067FMF6 PAC:18109078 Citrus sinensis 949  
orange1.1g002911m A0A067FV47 PAC:18109080 Citrus sinensis 867  
AT4G31480.2 Q9SV21 PAC:19647227 Arabidopsis thaliana 948  
AT4G31490.1 Q9SV20 PAC:19648671 Arabidopsis thaliana 948  
AT4G31480.1 Q9SV21 PAC:19647226 Arabidopsis thaliana 948  
Thhalv10024334m V4MCB2 PAC:20194958 Eutrema salsugineum 948  
Ciclev10007421m V4TS99 PAC:20794791 Citrus clementina 867  
Ciclev10007372m V4WAP9 PAC:20794790 Citrus clementina 949  
Ciclev10010393m V4UBL1 PAC:20794340 Citrus clementina 948  
Ciclev10007364m V4UGV4 PAC:20794789 Citrus clementina 958  
Lus10039684 PAC:23165109 Linum usitatissimum 949  
Lus10027159 PAC:23145413 Linum usitatissimum 800  
Lus10027160 PAC:23145454 Linum usitatissimum 123  
Lus10031570 PAC:23155897 Linum usitatissimum 949  
Lus10015105 PAC:23149537 Linum usitatissimum 949  
Potri.018G007400.1 A0A2K1WTZ7 PAC:27009024 Populus trichocarpa 949  
Potri.006G273300.1 B9N680 PAC:27004307 Populus trichocarpa 949  
Gorai.009G067100.3 A0A0D2QAF5 PAC:26768220 Gossypium raimondii 855  
Gorai.009G067100.2 A0A0D2QAF5 PAC:26768219 Gossypium raimondii 855  
Gorai.009G067100.1 A0A0D2RVB2 PAC:26768218 Gossypium raimondii 948  
Gorai.010G245600.4 A0A0D2UK68 PAC:26760246 Gossypium raimondii 881  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            14690497
            15261670
            17041781
            11208122