Protein Domain : IPR000336

Type:  Domain Name:  Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain
Description:  This immuniglobulin-like domain is found in polyproteins from Flavivirus and Alphavirus. Flaviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus, West Nile virus, Tick-borne encephalitis virus, Japanese encephalitis virus, and Dengue virus 2[]. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (), and the envelope glycoproteins M () and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza-type viruses and retroviruses. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents the Ig-like domain III, which contains a putative receptor-binding loop []. Short Name:  Flavivir/Alphavir_Ig-like

1 Child Features

DB identifier Type Name
IPR027287 Domain Flavivirus glycoprotein, immunoglobulin-like domain

0 Contains

1 Cross References

Identifier
G3DSA:2.60.40.350

1 Found In

DB identifier Type Name
IPR014412 Family Genome polyprotein, Flavivirus

0 GO Annotation

0 Ontology Annotations

1 Parent Features

DB identifier Type Name
IPR014756 Domain Immunoglobulin E-set

90 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Thhalv10021860m V4M2H7 PAC:20182634 Eutrema salsugineum 81  
Gorai.003G015200.1 A0A0D2REW5 PAC:26801100 Gossypium raimondii 192  
57518 I0YPP7 PAC:27395045 Coccomyxa subellipsoidea C-169 311  
56192 C1MP94 PAC:27347351 Micromonas pusilla CCMP1545 969  
Thecc1EG004851t2 A0A061DZ84 PAC:27432773 Theobroma cacao 173  
Thecc1EG004851t1 A0A061DSE1 PAC:27432772 Theobroma cacao 257  
Glyma.09G015200.1.p I1L048 PAC:30485687 Glycine max 240  
Bostr.17584s0024.1.p PAC:30662620 Boechera stricta 601  
Bostr.18351s0430.1.p PAC:30676814 Boechera stricta 143  
Pahal.B04196.1 A0A2S3H2Y9 PAC:32490938 Panicum hallii 568  
Sphfalx0061s0104.1.p PAC:32626884 Sphagnum fallax 66  
Mapoly0023s0172.1.p A0A2R6XCP2 PAC:33014067 Marchantia polymorpha 93  
Mapoly0071s0074.1.p A0A2R6WNM7 PAC:33007991 Marchantia polymorpha 75  
Zosma37g00360.1 A0A0K9P552 PAC:33169393 Zostera marina 393  
Brdisv1Tek-41042356m.p PAC:33491135 Brachypodium distachyon Tek-4 120  
Brdisv1pangenome1000240m.p PAC:33622345 Brachypodium distachyon Pangenome 133  
Brdisv1Bd30-11040131m.p PAC:34060238 Brachypodium distachyon Bd30-1 152  
Brdisv1Bd29-11029188m.p PAC:34147509 Brachypodium distachyon Bd29-1 259  
Brdisv1Bd1-11039056m.p PAC:34283622 Brachypodium distachyon Bd1-1 176  
Brdisv1Sig21035227m.p PAC:35273216 Brachypodium distachyon Sig2 323  
Oropetium_20150105_25225A PAC:36005782 Oropetium thomaeum 67  
Solyc02g071200.2.1 PAC:36158192 Solanum lycopersicum 303  
Phvul.003G208101.1.p PAC:37147604 Phaseolus vulgaris 112  
Podel.05G255600.1.p PAC:37318581 Populus deltoides WV94 106  
Bol012074 A0A3P6DHS1 PAC:37352383 Brassica oleracea capitata 318  
Pavir.2KG464100.1.p PAC:37564530 Panicum virgatum 550  
Sobic.002G328600.1.p C5XAS6 PAC:37949789 Sorghum bicolor 661  
VIT_204s0008g00790.2 PAC:38066768 Vitis vinifera 105  
Gohir.A02G165100.1.p PAC:38089737 Gossypium hirsutum 161  
Gohir.D03G014900.2.p PAC:38078516 Gossypium hirsutum 161  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            15378043
            12759475