Gene : Ciclev10028537m.g C. clementina v1.0
Defline:  (1 of 1) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  752
Name:  ? Ciclev10028537m.g Secondary Identifier:  ? PAC:20813179
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina PWY-2541 Citrus clementina pathologic  
Cclementina PWY-5670 Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10028537m.g 0.5kb upstream 0.5kb upstream 7946 true scaffold_8: 6314513-6322458 Citrus clementina
Ciclev10028537m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 6314513-6315012 Citrus clementina
Ciclev10028537m.g 0.5kb downstream 0.5kb downstream 7946 true scaffold_8: 6315013-6322958 Citrus clementina
Ciclev10028537m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 6322459-6322958 Citrus clementina
Ciclev10028537m.g 1.0kb upstream 1.0kb upstream 8446 true scaffold_8: 6314013-6322458 Citrus clementina
Ciclev10028537m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 6314013-6315012 Citrus clementina
Ciclev10028537m.g 1.0kb downstream 1.0kb downstream 8446 true scaffold_8: 6315013-6323458 Citrus clementina
Ciclev10028537m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 6322459-6323458 Citrus clementina
Ciclev10028537m.g 2.0kb upstream 2.0kb upstream 9446 true scaffold_8: 6313013-6322458 Citrus clementina
Ciclev10028537m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 6313013-6315012 Citrus clementina
Ciclev10028537m.g 2.0kb downstream 2.0kb downstream 9446 true scaffold_8: 6315013-6324458 Citrus clementina
Ciclev10028537m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 6322459-6324458 Citrus clementina
Ciclev10028537m.g 5.0kb upstream 5.0kb upstream 12446 true scaffold_8: 6310013-6322458 Citrus clementina
Ciclev10028537m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 6310013-6315012 Citrus clementina
Ciclev10028537m.g 5.0kb downstream 5.0kb downstream 12446 true scaffold_8: 6315013-6327458 Citrus clementina
Ciclev10028537m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 6322459-6327458 Citrus clementina
Ciclev10028537m.g 10.0kb upstream 10.0kb upstream 17446 true scaffold_8: 6305013-6322458 Citrus clementina
Ciclev10028537m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 6305013-6315012 Citrus clementina
Ciclev10028537m.g 10.0kb downstream 10.0kb downstream 17446 true scaffold_8: 6315013-6332458 Citrus clementina
Ciclev10028537m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 6322459-6332458 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124340465 5266 SBM View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain