Gene : Gorai.009G396600 G. raimondii v2.1
Defline:  (1 of 3) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  3966
Name:  ? Gorai.009G396600 Secondary Identifier:  ? PAC:26762536
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-7511 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.009G396600 0.5kb upstream 0.5kb upstream 1745 true Chr09: 54982562-54984306 Gossypium raimondii
Gorai.009G396600 0.5kb upstream 0.5kb upstream 500 false Chr09: 54983807-54984306 Gossypium raimondii
Gorai.009G396600 0.5kb downstream 0.5kb downstream 1745 true Chr09: 54982062-54983806 Gossypium raimondii
Gorai.009G396600 0.5kb downstream 0.5kb downstream 500 false Chr09: 54982062-54982561 Gossypium raimondii
Gorai.009G396600 1.0kb upstream 1.0kb upstream 2245 true Chr09: 54982562-54984806 Gossypium raimondii
Gorai.009G396600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 54983807-54984806 Gossypium raimondii
Gorai.009G396600 1.0kb downstream 1.0kb downstream 2245 true Chr09: 54981562-54983806 Gossypium raimondii
Gorai.009G396600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 54981562-54982561 Gossypium raimondii
Gorai.009G396600 2.0kb upstream 2.0kb upstream 3245 true Chr09: 54982562-54985806 Gossypium raimondii
Gorai.009G396600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 54983807-54985806 Gossypium raimondii
Gorai.009G396600 2.0kb downstream 2.0kb downstream 3245 true Chr09: 54980562-54983806 Gossypium raimondii
Gorai.009G396600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 54980562-54982561 Gossypium raimondii
Gorai.009G396600 5.0kb upstream 5.0kb upstream 6245 true Chr09: 54982562-54988806 Gossypium raimondii
Gorai.009G396600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 54983807-54988806 Gossypium raimondii
Gorai.009G396600 5.0kb downstream 5.0kb downstream 6245 true Chr09: 54977562-54983806 Gossypium raimondii
Gorai.009G396600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 54977562-54982561 Gossypium raimondii
Gorai.009G396600 10.0kb upstream 10.0kb upstream 11245 true Chr09: 54982562-54993806 Gossypium raimondii
Gorai.009G396600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 54983807-54993806 Gossypium raimondii
Gorai.009G396600 10.0kb downstream 10.0kb downstream 11245 true Chr09: 54972562-54983806 Gossypium raimondii
Gorai.009G396600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 54972562-54982561 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123810360 5264 Brassicales-Malvales Singleton cluster - no MSA
124307063 5266 SBM Singleton cluster - no MSA
124157114 5268 Malvidae Singleton cluster - no MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain