Gene : AL6G43180 A. lyrata v2.1

Defline:  (1 of 11) 3.2.1.67 - Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  3075
Name:  ? AL6G43180 Secondary Identifier:  ? PAC:35929352

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G43180 0.5kb upstream 0.5kb upstream 2377   true scaffold_6: 19477860-19480236 Arabidopsis lyrata
AL6G43180 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 19479737-19480236 Arabidopsis lyrata
AL6G43180 0.5kb downstream 0.5kb downstream 2377   true scaffold_6: 19477360-19479736 Arabidopsis lyrata
AL6G43180 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 19477360-19477859 Arabidopsis lyrata
AL6G43180 1.0kb upstream 1.0kb upstream 2877   true scaffold_6: 19477860-19480736 Arabidopsis lyrata
AL6G43180 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 19479737-19480736 Arabidopsis lyrata
AL6G43180 1.0kb downstream 1.0kb downstream 2877   true scaffold_6: 19476860-19479736 Arabidopsis lyrata
AL6G43180 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 19476860-19477859 Arabidopsis lyrata
AL6G43180 2.0kb upstream 2.0kb upstream 3877   true scaffold_6: 19477860-19481736 Arabidopsis lyrata
AL6G43180 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 19479737-19481736 Arabidopsis lyrata
AL6G43180 2.0kb downstream 2.0kb downstream 3877   true scaffold_6: 19475860-19479736 Arabidopsis lyrata
AL6G43180 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 19475860-19477859 Arabidopsis lyrata
AL6G43180 5.0kb upstream 5.0kb upstream 6877   true scaffold_6: 19477860-19484736 Arabidopsis lyrata
AL6G43180 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 19479737-19484736 Arabidopsis lyrata
AL6G43180 5.0kb downstream 5.0kb downstream 6877   true scaffold_6: 19472860-19479736 Arabidopsis lyrata
AL6G43180 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 19472860-19477859 Arabidopsis lyrata
AL6G43180 10.0kb upstream 10.0kb upstream 11877   true scaffold_6: 19477860-19489736 Arabidopsis lyrata
AL6G43180 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 19479737-19489736 Arabidopsis lyrata
AL6G43180 10.0kb downstream 10.0kb downstream 11877   true scaffold_6: 19467860-19479736 Arabidopsis lyrata
AL6G43180 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 19467860-19477859 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381128 5261 Brassicaceae View MSA
123837525 5264 Brassicales-Malvales View MSA
124337889 5266 SBM View MSA
124240129 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain