Gene : AL1G11800 A. lyrata v2.1

Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  174
Name:  ? AL1G11800 Secondary Identifier:  ? PAC:35933193

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G11800 0.5kb upstream 0.5kb upstream 3239   true scaffold_1: 628244-631482 Arabidopsis lyrata
AL1G11800 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 630983-631482 Arabidopsis lyrata
AL1G11800 0.5kb downstream 0.5kb downstream 3239   true scaffold_1: 627744-630982 Arabidopsis lyrata
AL1G11800 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 627744-628243 Arabidopsis lyrata
AL1G11800 1.0kb upstream 1.0kb upstream 3739   true scaffold_1: 628244-631982 Arabidopsis lyrata
AL1G11800 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 630983-631982 Arabidopsis lyrata
AL1G11800 1.0kb downstream 1.0kb downstream 3739   true scaffold_1: 627244-630982 Arabidopsis lyrata
AL1G11800 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 627244-628243 Arabidopsis lyrata
AL1G11800 2.0kb upstream 2.0kb upstream 4739   true scaffold_1: 628244-632982 Arabidopsis lyrata
AL1G11800 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 630983-632982 Arabidopsis lyrata
AL1G11800 2.0kb downstream 2.0kb downstream 4739   true scaffold_1: 626244-630982 Arabidopsis lyrata
AL1G11800 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 626244-628243 Arabidopsis lyrata
AL1G11800 5.0kb upstream 5.0kb upstream 7739   true scaffold_1: 628244-635982 Arabidopsis lyrata
AL1G11800 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 630983-635982 Arabidopsis lyrata
AL1G11800 5.0kb downstream 5.0kb downstream 7739   true scaffold_1: 623244-630982 Arabidopsis lyrata
AL1G11800 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 623244-628243 Arabidopsis lyrata
AL1G11800 10.0kb upstream 10.0kb upstream 12739   true scaffold_1: 628244-640982 Arabidopsis lyrata
AL1G11800 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 630983-640982 Arabidopsis lyrata
AL1G11800 10.0kb downstream 10.0kb downstream 12739   true scaffold_1: 618244-630982 Arabidopsis lyrata
AL1G11800 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 618244-628243 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain