Gene : Tp57577_TGAC_v2_gene27313 T. pratense v2
Defline:  (1 of 2) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) Genomic Order:  6
Name:  ? Tp57577_TGAC_v2_gene27313 Secondary Identifier:  ? PAC:35982917
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene27313 0.5kb upstream 0.5kb upstream 7398 true Tp57577_TGAC_v2_scaf_1051: 33328-40725 Trifolium pratense
Tp57577_TGAC_v2_gene27313 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1051: 40226-40725 Trifolium pratense
Tp57577_TGAC_v2_gene27313 0.5kb downstream 0.5kb downstream 7398 true Tp57577_TGAC_v2_scaf_1051: 32828-40225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1051: 32828-33327 Trifolium pratense
Tp57577_TGAC_v2_gene27313 1.0kb upstream 1.0kb upstream 7898 true Tp57577_TGAC_v2_scaf_1051: 33328-41225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_1051: 40226-41225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 1.0kb downstream 1.0kb downstream 7898 true Tp57577_TGAC_v2_scaf_1051: 32328-40225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_1051: 32328-33327 Trifolium pratense
Tp57577_TGAC_v2_gene27313 2.0kb upstream 2.0kb upstream 8898 true Tp57577_TGAC_v2_scaf_1051: 33328-42225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_1051: 40226-42225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 2.0kb downstream 2.0kb downstream 8898 true Tp57577_TGAC_v2_scaf_1051: 31328-40225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_1051: 31328-33327 Trifolium pratense
Tp57577_TGAC_v2_gene27313 5.0kb upstream 5.0kb upstream 11898 true Tp57577_TGAC_v2_scaf_1051: 33328-45225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_1051: 40226-45225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 5.0kb downstream 5.0kb downstream 11898 true Tp57577_TGAC_v2_scaf_1051: 28328-40225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_1051: 28328-33327 Trifolium pratense
Tp57577_TGAC_v2_gene27313 10.0kb upstream 10.0kb upstream 16898 true Tp57577_TGAC_v2_scaf_1051: 33328-50225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_1051: 40226-50225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 10.0kb downstream 10.0kb downstream 16898 true Tp57577_TGAC_v2_scaf_1051: 23328-40225 Trifolium pratense
Tp57577_TGAC_v2_gene27313 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_1051: 23328-33327 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314887 5265 Fabidae View MSA
124073273 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain