Gene : Tp57577_TGAC_v2_gene9663 T. pratense v2
Defline:  (1 of 106) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  16
Name:  ? Tp57577_TGAC_v2_gene9663 Secondary Identifier:  ? PAC:35952272
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene9663 0.5kb upstream 0.5kb upstream 2281 true Tp57577_TGAC_v2_scaf_204: 125915-128195 Trifolium pratense
Tp57577_TGAC_v2_gene9663 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_204: 127696-128195 Trifolium pratense
Tp57577_TGAC_v2_gene9663 0.5kb downstream 0.5kb downstream 2281 true Tp57577_TGAC_v2_scaf_204: 125415-127695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_204: 125415-125914 Trifolium pratense
Tp57577_TGAC_v2_gene9663 1.0kb upstream 1.0kb upstream 2781 true Tp57577_TGAC_v2_scaf_204: 125915-128695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_204: 127696-128695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 1.0kb downstream 1.0kb downstream 2781 true Tp57577_TGAC_v2_scaf_204: 124915-127695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_204: 124915-125914 Trifolium pratense
Tp57577_TGAC_v2_gene9663 2.0kb upstream 2.0kb upstream 3781 true Tp57577_TGAC_v2_scaf_204: 125915-129695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_204: 127696-129695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 2.0kb downstream 2.0kb downstream 3781 true Tp57577_TGAC_v2_scaf_204: 123915-127695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_204: 123915-125914 Trifolium pratense
Tp57577_TGAC_v2_gene9663 5.0kb upstream 5.0kb upstream 6781 true Tp57577_TGAC_v2_scaf_204: 125915-132695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_204: 127696-132695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 5.0kb downstream 5.0kb downstream 6781 true Tp57577_TGAC_v2_scaf_204: 120915-127695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_204: 120915-125914 Trifolium pratense
Tp57577_TGAC_v2_gene9663 10.0kb upstream 10.0kb upstream 11781 true Tp57577_TGAC_v2_scaf_204: 125915-137695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_204: 127696-137695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 10.0kb downstream 10.0kb downstream 11781 true Tp57577_TGAC_v2_scaf_204: 115915-127695 Trifolium pratense
Tp57577_TGAC_v2_gene9663 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_204: 115915-125914 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298158 5265 Fabidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain