Gene : Tp57577_TGAC_v2_gene21140 T. pratense v2
Defline:  (1 of 1) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  395
Name:  ? Tp57577_TGAC_v2_gene21140 Secondary Identifier:  ? PAC:35978176
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene21140 0.5kb upstream 0.5kb upstream 14831 true Tp57577_TGAC_v2_LG1: 2953273-2968103 Trifolium pratense
Tp57577_TGAC_v2_gene21140 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 2967604-2968103 Trifolium pratense
Tp57577_TGAC_v2_gene21140 0.5kb downstream 0.5kb downstream 14831 true Tp57577_TGAC_v2_LG1: 2952773-2967603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 2952773-2953272 Trifolium pratense
Tp57577_TGAC_v2_gene21140 1.0kb upstream 1.0kb upstream 15331 true Tp57577_TGAC_v2_LG1: 2953273-2968603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 2967604-2968603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 1.0kb downstream 1.0kb downstream 15331 true Tp57577_TGAC_v2_LG1: 2952273-2967603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 2952273-2953272 Trifolium pratense
Tp57577_TGAC_v2_gene21140 2.0kb upstream 2.0kb upstream 16331 true Tp57577_TGAC_v2_LG1: 2953273-2969603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 2967604-2969603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 2.0kb downstream 2.0kb downstream 16331 true Tp57577_TGAC_v2_LG1: 2951273-2967603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 2951273-2953272 Trifolium pratense
Tp57577_TGAC_v2_gene21140 5.0kb upstream 5.0kb upstream 19331 true Tp57577_TGAC_v2_LG1: 2953273-2972603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 2967604-2972603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 5.0kb downstream 5.0kb downstream 19331 true Tp57577_TGAC_v2_LG1: 2948273-2967603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 2948273-2953272 Trifolium pratense
Tp57577_TGAC_v2_gene21140 10.0kb upstream 10.0kb upstream 24331 true Tp57577_TGAC_v2_LG1: 2953273-2977603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 2967604-2977603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 10.0kb downstream 10.0kb downstream 24331 true Tp57577_TGAC_v2_LG1: 2943273-2967603 Trifolium pratense
Tp57577_TGAC_v2_gene21140 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 2943273-2953272 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306677 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain