Gene : Tp57577_TGAC_v2_gene12043 T. pratense v2
Defline:  (1 of 2) PTHR12313//PTHR12313:SF6 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  1276
Name:  ? Tp57577_TGAC_v2_gene12043 Secondary Identifier:  ? PAC:35989176
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene12043 0.5kb upstream 0.5kb upstream 1395 true Tp57577_TGAC_v2_LG3: 9989196-9990590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 9989196-9989695 Trifolium pratense
Tp57577_TGAC_v2_gene12043 0.5kb downstream 0.5kb downstream 1395 true Tp57577_TGAC_v2_LG3: 9989696-9991090 Trifolium pratense
Tp57577_TGAC_v2_gene12043 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 9990591-9991090 Trifolium pratense
Tp57577_TGAC_v2_gene12043 1.0kb upstream 1.0kb upstream 1895 true Tp57577_TGAC_v2_LG3: 9988696-9990590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 9988696-9989695 Trifolium pratense
Tp57577_TGAC_v2_gene12043 1.0kb downstream 1.0kb downstream 1895 true Tp57577_TGAC_v2_LG3: 9989696-9991590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 9990591-9991590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 2.0kb upstream 2.0kb upstream 2895 true Tp57577_TGAC_v2_LG3: 9987696-9990590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 9987696-9989695 Trifolium pratense
Tp57577_TGAC_v2_gene12043 2.0kb downstream 2.0kb downstream 2895 true Tp57577_TGAC_v2_LG3: 9989696-9992590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 9990591-9992590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 5.0kb upstream 5.0kb upstream 5895 true Tp57577_TGAC_v2_LG3: 9984696-9990590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 9984696-9989695 Trifolium pratense
Tp57577_TGAC_v2_gene12043 5.0kb downstream 5.0kb downstream 5895 true Tp57577_TGAC_v2_LG3: 9989696-9995590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 9990591-9995590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 10.0kb upstream 10.0kb upstream 10895 true Tp57577_TGAC_v2_LG3: 9979696-9990590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 9979696-9989695 Trifolium pratense
Tp57577_TGAC_v2_gene12043 10.0kb downstream 10.0kb downstream 10895 true Tp57577_TGAC_v2_LG3: 9989696-10000590 Trifolium pratense
Tp57577_TGAC_v2_gene12043 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 9990591-10000590 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309912 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain