Gene : Tp57577_TGAC_v2_gene21750 T. pratense v2
Defline:  (1 of 4) PTHR12313//PTHR12313:SF5 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  1587
Name:  ? Tp57577_TGAC_v2_gene21750 Secondary Identifier:  ? PAC:35963550
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene21750 0.5kb upstream 0.5kb upstream 4110 true Tp57577_TGAC_v2_LG4: 15103214-15107323 Trifolium pratense
Tp57577_TGAC_v2_gene21750 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG4: 15106824-15107323 Trifolium pratense
Tp57577_TGAC_v2_gene21750 0.5kb downstream 0.5kb downstream 4110 true Tp57577_TGAC_v2_LG4: 15102714-15106823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG4: 15102714-15103213 Trifolium pratense
Tp57577_TGAC_v2_gene21750 1.0kb upstream 1.0kb upstream 4610 true Tp57577_TGAC_v2_LG4: 15103214-15107823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG4: 15106824-15107823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 1.0kb downstream 1.0kb downstream 4610 true Tp57577_TGAC_v2_LG4: 15102214-15106823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG4: 15102214-15103213 Trifolium pratense
Tp57577_TGAC_v2_gene21750 2.0kb upstream 2.0kb upstream 5610 true Tp57577_TGAC_v2_LG4: 15103214-15108823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG4: 15106824-15108823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 2.0kb downstream 2.0kb downstream 5610 true Tp57577_TGAC_v2_LG4: 15101214-15106823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG4: 15101214-15103213 Trifolium pratense
Tp57577_TGAC_v2_gene21750 5.0kb upstream 5.0kb upstream 8610 true Tp57577_TGAC_v2_LG4: 15103214-15111823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG4: 15106824-15111823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 5.0kb downstream 5.0kb downstream 8610 true Tp57577_TGAC_v2_LG4: 15098214-15106823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG4: 15098214-15103213 Trifolium pratense
Tp57577_TGAC_v2_gene21750 10.0kb upstream 10.0kb upstream 13610 true Tp57577_TGAC_v2_LG4: 15103214-15116823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG4: 15106824-15116823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 10.0kb downstream 10.0kb downstream 13610 true Tp57577_TGAC_v2_LG4: 15093214-15106823 Trifolium pratense
Tp57577_TGAC_v2_gene21750 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG4: 15093214-15103213 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain