Gene : Solyc05g041230.1 S. lycopersicum ITAG2.4
Defline:  (1 of 11) PTHR33180:SF4 - PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN Description:  Photosystem II CP43 chlorophyll apoprotein (AHRD V1 ***- D5MAI0_PEA); contains Interpro domain(s) IPR000932 Photosystem antenna protein-like
Genomic Order:  1483 Name:  ? Solyc05g041230.1
Secondary Identifier:  ? PAC:36146050
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g041230.1 0.5kb upstream 0.5kb upstream 797 true SL2.50ch05: 50756609-50757405 Solanum lycopersicum
Solyc05g041230.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 50756906-50757405 Solanum lycopersicum
Solyc05g041230.1 0.5kb downstream 0.5kb downstream 797 true SL2.50ch05: 50756109-50756905 Solanum lycopersicum
Solyc05g041230.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 50756109-50756608 Solanum lycopersicum
Solyc05g041230.1 1.0kb upstream 1.0kb upstream 1297 true SL2.50ch05: 50756609-50757905 Solanum lycopersicum
Solyc05g041230.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 50756906-50757905 Solanum lycopersicum
Solyc05g041230.1 1.0kb downstream 1.0kb downstream 1297 true SL2.50ch05: 50755609-50756905 Solanum lycopersicum
Solyc05g041230.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 50755609-50756608 Solanum lycopersicum
Solyc05g041230.1 2.0kb upstream 2.0kb upstream 2297 true SL2.50ch05: 50756609-50758905 Solanum lycopersicum
Solyc05g041230.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 50756906-50758905 Solanum lycopersicum
Solyc05g041230.1 2.0kb downstream 2.0kb downstream 2297 true SL2.50ch05: 50754609-50756905 Solanum lycopersicum
Solyc05g041230.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 50754609-50756608 Solanum lycopersicum
Solyc05g041230.1 5.0kb upstream 5.0kb upstream 5297 true SL2.50ch05: 50756609-50761905 Solanum lycopersicum
Solyc05g041230.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 50756906-50761905 Solanum lycopersicum
Solyc05g041230.1 5.0kb downstream 5.0kb downstream 5297 true SL2.50ch05: 50751609-50756905 Solanum lycopersicum
Solyc05g041230.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 50751609-50756608 Solanum lycopersicum
Solyc05g041230.1 10.0kb upstream 10.0kb upstream 10297 true SL2.50ch05: 50756609-50766905 Solanum lycopersicum
Solyc05g041230.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 50756906-50766905 Solanum lycopersicum
Solyc05g041230.1 10.0kb downstream 10.0kb downstream 10297 true SL2.50ch05: 50746609-50756905 Solanum lycopersicum
Solyc05g041230.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 50746609-50756608 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121367919 5263 Asterids Singleton cluster - no MSA
123752529 5271 Pentapetalae View MSA
122774617 5272 Eudicot View MSA
122048462 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121310978 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain