Gene : Phvul.001G029800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Genomic Order:  300
Name:  ? Phvul.001G029800 Secondary Identifier:  ? PAC:37169874
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G029800 0.5kb upstream 0.5kb upstream 15002 true Chr01: 2647370-2662371 Phaseolus vulgaris
Phvul.001G029800 0.5kb upstream 0.5kb upstream 500 false Chr01: 2661872-2662371 Phaseolus vulgaris
Phvul.001G029800 0.5kb downstream 0.5kb downstream 15002 true Chr01: 2646870-2661871 Phaseolus vulgaris
Phvul.001G029800 0.5kb downstream 0.5kb downstream 500 false Chr01: 2646870-2647369 Phaseolus vulgaris
Phvul.001G029800 1.0kb upstream 1.0kb upstream 15502 true Chr01: 2647370-2662871 Phaseolus vulgaris
Phvul.001G029800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2661872-2662871 Phaseolus vulgaris
Phvul.001G029800 1.0kb downstream 1.0kb downstream 15502 true Chr01: 2646370-2661871 Phaseolus vulgaris
Phvul.001G029800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2646370-2647369 Phaseolus vulgaris
Phvul.001G029800 2.0kb upstream 2.0kb upstream 16502 true Chr01: 2647370-2663871 Phaseolus vulgaris
Phvul.001G029800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2661872-2663871 Phaseolus vulgaris
Phvul.001G029800 2.0kb downstream 2.0kb downstream 16502 true Chr01: 2645370-2661871 Phaseolus vulgaris
Phvul.001G029800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2645370-2647369 Phaseolus vulgaris
Phvul.001G029800 5.0kb upstream 5.0kb upstream 19502 true Chr01: 2647370-2666871 Phaseolus vulgaris
Phvul.001G029800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2661872-2666871 Phaseolus vulgaris
Phvul.001G029800 5.0kb downstream 5.0kb downstream 19502 true Chr01: 2642370-2661871 Phaseolus vulgaris
Phvul.001G029800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2642370-2647369 Phaseolus vulgaris
Phvul.001G029800 10.0kb upstream 10.0kb upstream 24502 true Chr01: 2647370-2671871 Phaseolus vulgaris
Phvul.001G029800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2661872-2671871 Phaseolus vulgaris
Phvul.001G029800 10.0kb downstream 10.0kb downstream 24502 true Chr01: 2637370-2661871 Phaseolus vulgaris
Phvul.001G029800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2637370-2647369 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303308 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.7105 0.0 16.5983   Low
cufflinks 18.3427 0.0 52.4882    
cufflinks 18.2864 0.0 52.5985    
cufflinks 6.66671 0.0 19.1613   Low
cufflinks 16.1306 0.0 45.1377    
cufflinks 17.6226 0.0 50.417    
cufflinks 20.3073 0.0 59.3917    
cufflinks 21.1414 0.0 62.5739    
cufflinks 19.2432 0.0 55.8947    
cufflinks 27.4159 0.0 83.124   High
cufflinks 13.5437 0.0 37.8219    

0 Strain