Gene : Phvul.001G017900 P. vulgaris v2.1
Defline:  (1 of 3) PTHR22844//PTHR22844:SF145 - F-BOX AND WD40 DOMAIN PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  181
Name:  ? Phvul.001G017900 Secondary Identifier:  ? PAC:37169980
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G017900 0.5kb upstream 0.5kb upstream 2560 true Chr01: 1425651-1428210 Phaseolus vulgaris
Phvul.001G017900 0.5kb upstream 0.5kb upstream 500 false Chr01: 1425651-1426150 Phaseolus vulgaris
Phvul.001G017900 0.5kb downstream 0.5kb downstream 2560 true Chr01: 1426151-1428710 Phaseolus vulgaris
Phvul.001G017900 0.5kb downstream 0.5kb downstream 500 false Chr01: 1428211-1428710 Phaseolus vulgaris
Phvul.001G017900 1.0kb upstream 1.0kb upstream 3060 true Chr01: 1425151-1428210 Phaseolus vulgaris
Phvul.001G017900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1425151-1426150 Phaseolus vulgaris
Phvul.001G017900 1.0kb downstream 1.0kb downstream 3060 true Chr01: 1426151-1429210 Phaseolus vulgaris
Phvul.001G017900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1428211-1429210 Phaseolus vulgaris
Phvul.001G017900 2.0kb upstream 2.0kb upstream 4060 true Chr01: 1424151-1428210 Phaseolus vulgaris
Phvul.001G017900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1424151-1426150 Phaseolus vulgaris
Phvul.001G017900 2.0kb downstream 2.0kb downstream 4060 true Chr01: 1426151-1430210 Phaseolus vulgaris
Phvul.001G017900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1428211-1430210 Phaseolus vulgaris
Phvul.001G017900 5.0kb upstream 5.0kb upstream 7060 true Chr01: 1421151-1428210 Phaseolus vulgaris
Phvul.001G017900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1421151-1426150 Phaseolus vulgaris
Phvul.001G017900 5.0kb downstream 5.0kb downstream 7060 true Chr01: 1426151-1433210 Phaseolus vulgaris
Phvul.001G017900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1428211-1433210 Phaseolus vulgaris
Phvul.001G017900 10.0kb upstream 10.0kb upstream 12060 true Chr01: 1416151-1428210 Phaseolus vulgaris
Phvul.001G017900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1416151-1426150 Phaseolus vulgaris
Phvul.001G017900 10.0kb downstream 10.0kb downstream 12060 true Chr01: 1426151-1438210 Phaseolus vulgaris
Phvul.001G017900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1428211-1438210 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300745 5265 Fabidae View MSA
124067284 5270 Rosid View MSA
123752905 5271 Pentapetalae View MSA
122794540 5272 Eudicot View MSA
122049001 5273 Angiosperm View MSA
121349705 5274 Embryophyte View MSA
123428719 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.0027 0.0 56.9833   High
cufflinks 3.20454 0.0 9.28171    
cufflinks 6.47121 0.0 17.727    
cufflinks 20.9446 0.0 54.2578   High
cufflinks 0.806476 0.0 2.72386   Low
cufflinks 4.52209 0.0 12.6786    
cufflinks 3.65773 0.0 10.3312    
cufflinks 4.48991 0.0 12.582    
cufflinks 1.69765 0.0 5.21643    
cufflinks 1.1535 0.0 3.73921   Low
cufflinks 3.16896 0.0 9.09454    

0 Strain