Gene : Phvul.001G109300 P. vulgaris v2.1
Defline:  (1 of 2) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) Genomic Order:  1065
Name:  ? Phvul.001G109300 Secondary Identifier:  ? PAC:37170937
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G109300 0.5kb upstream 0.5kb upstream 13218 true Chr01: 28580248-28593465 Phaseolus vulgaris
Phvul.001G109300 0.5kb upstream 0.5kb upstream 500 false Chr01: 28580248-28580747 Phaseolus vulgaris
Phvul.001G109300 0.5kb downstream 0.5kb downstream 13218 true Chr01: 28580748-28593965 Phaseolus vulgaris
Phvul.001G109300 0.5kb downstream 0.5kb downstream 500 false Chr01: 28593466-28593965 Phaseolus vulgaris
Phvul.001G109300 1.0kb upstream 1.0kb upstream 13718 true Chr01: 28579748-28593465 Phaseolus vulgaris
Phvul.001G109300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 28579748-28580747 Phaseolus vulgaris
Phvul.001G109300 1.0kb downstream 1.0kb downstream 13718 true Chr01: 28580748-28594465 Phaseolus vulgaris
Phvul.001G109300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 28593466-28594465 Phaseolus vulgaris
Phvul.001G109300 2.0kb upstream 2.0kb upstream 14718 true Chr01: 28578748-28593465 Phaseolus vulgaris
Phvul.001G109300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 28578748-28580747 Phaseolus vulgaris
Phvul.001G109300 2.0kb downstream 2.0kb downstream 14718 true Chr01: 28580748-28595465 Phaseolus vulgaris
Phvul.001G109300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 28593466-28595465 Phaseolus vulgaris
Phvul.001G109300 5.0kb upstream 5.0kb upstream 17718 true Chr01: 28575748-28593465 Phaseolus vulgaris
Phvul.001G109300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 28575748-28580747 Phaseolus vulgaris
Phvul.001G109300 5.0kb downstream 5.0kb downstream 17718 true Chr01: 28580748-28598465 Phaseolus vulgaris
Phvul.001G109300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 28593466-28598465 Phaseolus vulgaris
Phvul.001G109300 10.0kb upstream 10.0kb upstream 22718 true Chr01: 28570748-28593465 Phaseolus vulgaris
Phvul.001G109300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 28570748-28580747 Phaseolus vulgaris
Phvul.001G109300 10.0kb downstream 10.0kb downstream 22718 true Chr01: 28580748-28603465 Phaseolus vulgaris
Phvul.001G109300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 28593466-28603465 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301146 5265 Fabidae View MSA
124060805 5270 Rosid View MSA
123746198 5271 Pentapetalae View MSA
122787645 5272 Eudicot View MSA
122046852 5273 Angiosperm View MSA
121349524 5274 Embryophyte View MSA
123426579 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.8808 0.0 32.1308   Low
cufflinks 22.5163 0.0 65.552   High
cufflinks 18.7359 0.0 61.5335    
cufflinks 13.4841 0.0 39.2511   Low
cufflinks 19.5101 0.0 55.9238    
cufflinks 16.8217 0.0 48.9717    
cufflinks 16.2761 0.0 51.8649    
cufflinks 15.6928 0.0 50.0113    
cufflinks 20.1718 0.0 68.4595    
cufflinks 21.5289 0.0 61.0829   High
cufflinks 17.2295 0.0 54.8974    

0 Strain