Gene : Phvul.001G061400 P. vulgaris v2.1
Defline:  (1 of 3) K03093 - RNA polymerase sigma factor (SIGMA70) Genomic Order:  623
Name:  ? Phvul.001G061400 Secondary Identifier:  ? PAC:37169935
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G061400 0.5kb upstream 0.5kb upstream 5298 true Chr01: 7309073-7314370 Phaseolus vulgaris
Phvul.001G061400 0.5kb upstream 0.5kb upstream 500 false Chr01: 7309073-7309572 Phaseolus vulgaris
Phvul.001G061400 0.5kb downstream 0.5kb downstream 5298 true Chr01: 7309573-7314870 Phaseolus vulgaris
Phvul.001G061400 0.5kb downstream 0.5kb downstream 500 false Chr01: 7314371-7314870 Phaseolus vulgaris
Phvul.001G061400 1.0kb upstream 1.0kb upstream 5798 true Chr01: 7308573-7314370 Phaseolus vulgaris
Phvul.001G061400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7308573-7309572 Phaseolus vulgaris
Phvul.001G061400 1.0kb downstream 1.0kb downstream 5798 true Chr01: 7309573-7315370 Phaseolus vulgaris
Phvul.001G061400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7314371-7315370 Phaseolus vulgaris
Phvul.001G061400 2.0kb upstream 2.0kb upstream 6798 true Chr01: 7307573-7314370 Phaseolus vulgaris
Phvul.001G061400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7307573-7309572 Phaseolus vulgaris
Phvul.001G061400 2.0kb downstream 2.0kb downstream 6798 true Chr01: 7309573-7316370 Phaseolus vulgaris
Phvul.001G061400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7314371-7316370 Phaseolus vulgaris
Phvul.001G061400 5.0kb upstream 5.0kb upstream 9798 true Chr01: 7304573-7314370 Phaseolus vulgaris
Phvul.001G061400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7304573-7309572 Phaseolus vulgaris
Phvul.001G061400 5.0kb downstream 5.0kb downstream 9798 true Chr01: 7309573-7319370 Phaseolus vulgaris
Phvul.001G061400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7314371-7319370 Phaseolus vulgaris
Phvul.001G061400 10.0kb upstream 10.0kb upstream 14798 true Chr01: 7299573-7314370 Phaseolus vulgaris
Phvul.001G061400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7299573-7309572 Phaseolus vulgaris
Phvul.001G061400 10.0kb downstream 10.0kb downstream 14798 true Chr01: 7309573-7324370 Phaseolus vulgaris
Phvul.001G061400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7314371-7324370 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.51362 0.0 12.9617    
cufflinks 4.33381 0.0 12.5117    
cufflinks 39.9987 0.0 104.785 High High
cufflinks 1.89579 0.0 6.09143    
cufflinks 4.1599 0.0 12.219    
cufflinks 20.237 0.0 52.3679   High
cufflinks 0.0383501 0.0 0.174607 Low Low
cufflinks 0.0936087 0.0 0.389474 Low Low
cufflinks 0.0850861 0.0 0.359789 Low Low
cufflinks 3.76369 0.0 11.0592    
cufflinks 7.47608 0.0 20.6236    

0 Strain