Gene : Phvul.001G061100 P. vulgaris v2.1
Defline:  (1 of 2) K11090 - lupus La protein (LA, SSB) Genomic Order:  620
Name:  ? Phvul.001G061100 Secondary Identifier:  ? PAC:37169619
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G061100 0.5kb upstream 0.5kb upstream 5300 true Chr01: 7252518-7257817 Phaseolus vulgaris
Phvul.001G061100 0.5kb upstream 0.5kb upstream 500 false Chr01: 7252518-7253017 Phaseolus vulgaris
Phvul.001G061100 0.5kb downstream 0.5kb downstream 5300 true Chr01: 7253018-7258317 Phaseolus vulgaris
Phvul.001G061100 0.5kb downstream 0.5kb downstream 500 false Chr01: 7257818-7258317 Phaseolus vulgaris
Phvul.001G061100 1.0kb upstream 1.0kb upstream 5800 true Chr01: 7252018-7257817 Phaseolus vulgaris
Phvul.001G061100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7252018-7253017 Phaseolus vulgaris
Phvul.001G061100 1.0kb downstream 1.0kb downstream 5800 true Chr01: 7253018-7258817 Phaseolus vulgaris
Phvul.001G061100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7257818-7258817 Phaseolus vulgaris
Phvul.001G061100 2.0kb upstream 2.0kb upstream 6800 true Chr01: 7251018-7257817 Phaseolus vulgaris
Phvul.001G061100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7251018-7253017 Phaseolus vulgaris
Phvul.001G061100 2.0kb downstream 2.0kb downstream 6800 true Chr01: 7253018-7259817 Phaseolus vulgaris
Phvul.001G061100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7257818-7259817 Phaseolus vulgaris
Phvul.001G061100 5.0kb upstream 5.0kb upstream 9800 true Chr01: 7248018-7257817 Phaseolus vulgaris
Phvul.001G061100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7248018-7253017 Phaseolus vulgaris
Phvul.001G061100 5.0kb downstream 5.0kb downstream 9800 true Chr01: 7253018-7262817 Phaseolus vulgaris
Phvul.001G061100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7257818-7262817 Phaseolus vulgaris
Phvul.001G061100 10.0kb upstream 10.0kb upstream 14800 true Chr01: 7243018-7257817 Phaseolus vulgaris
Phvul.001G061100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7243018-7253017 Phaseolus vulgaris
Phvul.001G061100 10.0kb downstream 10.0kb downstream 14800 true Chr01: 7253018-7267817 Phaseolus vulgaris
Phvul.001G061100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7257818-7267817 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041135 5273 Angiosperm View MSA
122309017 5265 Fabidae View MSA
124064026 5270 Rosid View MSA
123746572 5271 Pentapetalae View MSA
122791313 5272 Eudicot View MSA
121349930 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.77229 0.0 16.0315    
cufflinks 9.18529 0.0 27.911   High
cufflinks 4.7077 0.0 15.9796    
cufflinks 3.82479 0.0 13.9426   Low
cufflinks 5.63117 0.0 18.9433    
cufflinks 3.90125 0.0 14.5655   Low
cufflinks 7.24782 0.0 26.5647    
cufflinks 8.6407 0.0 30.8846   High
cufflinks 6.22666 0.0 23.8959    
cufflinks 6.28957 0.0 20.3753    
cufflinks 6.13381 0.0 20.8795    

0 Strain