Gene : Phvul.002G104500 P. vulgaris v2.1
Defline:  (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Genomic Order:  1046
Name:  ? Phvul.002G104500 Secondary Identifier:  ? PAC:37177392
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G104500 0.5kb upstream 0.5kb upstream 8143 true Chr02: 22273050-22281192 Phaseolus vulgaris
Phvul.002G104500 0.5kb upstream 0.5kb upstream 500 false Chr02: 22280693-22281192 Phaseolus vulgaris
Phvul.002G104500 0.5kb downstream 0.5kb downstream 8143 true Chr02: 22272550-22280692 Phaseolus vulgaris
Phvul.002G104500 0.5kb downstream 0.5kb downstream 500 false Chr02: 22272550-22273049 Phaseolus vulgaris
Phvul.002G104500 1.0kb upstream 1.0kb upstream 8643 true Chr02: 22273050-22281692 Phaseolus vulgaris
Phvul.002G104500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 22280693-22281692 Phaseolus vulgaris
Phvul.002G104500 1.0kb downstream 1.0kb downstream 8643 true Chr02: 22272050-22280692 Phaseolus vulgaris
Phvul.002G104500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 22272050-22273049 Phaseolus vulgaris
Phvul.002G104500 2.0kb upstream 2.0kb upstream 9643 true Chr02: 22273050-22282692 Phaseolus vulgaris
Phvul.002G104500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 22280693-22282692 Phaseolus vulgaris
Phvul.002G104500 2.0kb downstream 2.0kb downstream 9643 true Chr02: 22271050-22280692 Phaseolus vulgaris
Phvul.002G104500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 22271050-22273049 Phaseolus vulgaris
Phvul.002G104500 5.0kb upstream 5.0kb upstream 12643 true Chr02: 22273050-22285692 Phaseolus vulgaris
Phvul.002G104500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 22280693-22285692 Phaseolus vulgaris
Phvul.002G104500 5.0kb downstream 5.0kb downstream 12643 true Chr02: 22268050-22280692 Phaseolus vulgaris
Phvul.002G104500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 22268050-22273049 Phaseolus vulgaris
Phvul.002G104500 10.0kb upstream 10.0kb upstream 17643 true Chr02: 22273050-22290692 Phaseolus vulgaris
Phvul.002G104500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 22280693-22290692 Phaseolus vulgaris
Phvul.002G104500 10.0kb downstream 10.0kb downstream 17643 true Chr02: 22263050-22280692 Phaseolus vulgaris
Phvul.002G104500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 22263050-22273049 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041040 5273 Angiosperm View MSA
122307609 5265 Fabidae View MSA
124064405 5270 Rosid View MSA
123740882 5271 Pentapetalae View MSA
122790504 5272 Eudicot View MSA
121343935 5274 Embryophyte View MSA
123424077 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.88998 0.0 27.7523   Low
cufflinks 24.1592 0.0 77.579    
cufflinks 23.6488 0.0 75.9772    
cufflinks 8.85323 0.0 24.6788   Low
cufflinks 30.3723 0.0 101.565    
cufflinks 27.9946 0.0 92.7912    
cufflinks 37.7855 0.0 134.975 High  
cufflinks 30.6125 0.0 104.639 High  
cufflinks 37.29 0.0 132.282 High  
cufflinks 52.9096 0.0 165.245 High High
cufflinks 23.3611 0.0 73.9889    

0 Strain